Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e09
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    28   1.4  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   5.5  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   7.2  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 602 PTV*LCCVGNVQYLYR*ILPTTARYCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTS 423
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 422 NVYLWLVLAAD 390
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 252 DMLLLRDEAVEDASPSGTAVLPNPGNP 172
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 681 PQPQNGK*STVVPTSTSKWEVKH 749
           P+P NGK  + + T  S+WE+ H
Sbjct: 483 PKPVNGKYRSDMYTIKSRWEIPH 505


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 22  FQFTVNENXLKLHKSQTCFNKNRTHER 102
           FQ TVN+  + L KS+   N+ R H R
Sbjct: 324 FQATVNKTMMLLTKSRLGLNRCRAHAR 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,258
Number of Sequences: 5004
Number of extensions: 69332
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)