Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e09
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    29   3.9  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.8  
EF090260-1|ABK78773.1|   99|Caenorhabditis elegans glycoprotein ...    28   6.8  
AF022982-10|AAB69939.1|   99|Caenorhabditis elegans Hypothetical...    28   6.8  
AF022982-9|ABS83856.1|  125|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical
           protein Y34B4A.10 protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 574 LPTQHS*TVGTQNPAESASNHTAQKIKREVKHRRAHLNLKMGSKAPSCPPQ 726
           LP+Q +  V + + AE+    T  K  ++ +HRR H  LK  +K    P +
Sbjct: 220 LPSQQT-EVASTSIAETEEPTTTAKTPKKRRHRRKHRKLKKVTKVTEAPAE 269


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -2

Query: 321 GCIFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 142
           GC  + Y  +  ++     V G   L  R    E+    GTA  P+  NP P  + + I 
Sbjct: 12  GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68

Query: 141 TIPRC 127
            + +C
Sbjct: 69  NVCQC 73


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 306  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 154
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 153  KTIK 142
              ++
Sbjct: 1726 GAVQ 1729


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 306  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 154
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 153  KTIK 142
              ++
Sbjct: 1726 GAVQ 1729


>EF090260-1|ABK78773.1|   99|Caenorhabditis elegans glycoprotein
           hormone beta 5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 636 YCSKNKTGSKAPSCPPQPQNGK*STVVPTSTSK 734
           YC  +++G+     PP+ QN K  T+V TST K
Sbjct: 32  YCKTSESGTHG--FPPRVQNSKVCTLVTTSTRK 62


>AF022982-10|AAB69939.1|   99|Caenorhabditis elegans Hypothetical
           protein T23B12.8a protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 636 YCSKNKTGSKAPSCPPQPQNGK*STVVPTSTSK 734
           YC  +++G+     PP+ QN K  T+V TST K
Sbjct: 32  YCKTSESGTHG--FPPRVQNSKVCTLVTTSTRK 62


>AF022982-9|ABS83856.1|  125|Caenorhabditis elegans Hypothetical
           protein T23B12.8b protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 636 YCSKNKTGSKAPSCPPQPQNGK*STVVPTSTSK 734
           YC  +++G+     PP+ QN K  T+V TST K
Sbjct: 58  YCKTSESGTHG--FPPRVQNSKVCTLVTTSTRK 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,013
Number of Sequences: 27780
Number of extensions: 413399
Number of successful extensions: 1167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)