Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15e06
(544 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in P6.... 176 2e-43
UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in P6.... 79 7e-14
UniRef50_Q00732 Cluster: p48 protein; n=16; Nucleopolyhedrovirus... 70 4e-11
UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12... 66 7e-10
UniRef50_P24651 Cluster: p48 protein; n=7; Nucleopolyhedrovirus|... 57 3e-07
UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata nucleopolyhe... 50 5e-05
UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispa... 49 8e-05
UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12... 48 1e-04
UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep: O... 47 2e-04
UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1; ... 46 6e-04
UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1; ... 46 6e-04
UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P1... 45 0.001
UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2; ... 36 0.60
UniRef50_Q55C41 Cluster: Putative uncharacterized protein; n=1; ... 34 2.4
UniRef50_Q12267 Cluster: Structural maintenance of chromosomes p... 34 2.4
UniRef50_Q6UPR1 Cluster: NIMA-related kinase 5; n=1; Chlamydomon... 33 5.6
UniRef50_Q3LS85 Cluster: 185/333; n=79; Strongylocentrotus purpu... 33 5.6
UniRef50_A3IXJ5 Cluster: Putative uncharacterized protein; n=1; ... 32 7.4
UniRef50_A0D7G9 Cluster: Chromosome undetermined scaffold_4, who... 32 7.4
UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein pre... 32 9.8
UniRef50_Q232X2 Cluster: Putative uncharacterized protein; n=4; ... 32 9.8
UniRef50_A5DV71 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
>UniRef50_P41482 Cluster: Uncharacterized 13.3 kDa protein in
P6.9-VP48 intergenic region; n=7;
Nucleopolyhedrovirus|Rep: Uncharacterized 13.3 kDa
protein in P6.9-VP48 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 122
Score = 176 bits (429), Expect = 2e-43
Identities = 95/118 (80%), Positives = 98/118 (83%)
Frame = -2
Query: 411 MIASINDIDDMDTGNNMSQTXXXXXXXXXXXXXAQTQMAAVDMLQTINTTASQTAASLLI 232
MIASIND D MDT +NMSQ AQTQMAAVDMLQTINT ASQTAASLLI
Sbjct: 1 MIASINDTD-MDTDDNMSQARRNRRNRPPARPSAQTQMAAVDMLQTINTAASQTAASLLI 59
Query: 231 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 58
NDITPNKTESLKILSTQSVGAR+LLEPMQAN + IKLNRIETVNVLDFLGSVYDNTIQ
Sbjct: 60 NDITPNKTESLKILSTQSVGARSLLEPMQANASTIKLNRIETVNVLDFLGSVYDNTIQ 117
>UniRef50_P24652 Cluster: Uncharacterized 12.2 kDa protein in
P6.5-VP48 intergenic region; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 12.2 kDa
protein in P6.5-VP48 intergenic region - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 112
Score = 79.0 bits (186), Expect = 7e-14
Identities = 40/83 (48%), Positives = 54/83 (65%)
Frame = -2
Query: 306 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 127
TQ+AA +ML +N ++TAAS ++ D + NK SL L QS+ AR L+E +QA I
Sbjct: 27 TQLAAAEMLHNMN--GAETAASFIVKDASENKIASLTTLGNQSIAARKLVESLQAGAPTI 84
Query: 126 KLNRIETVNVLDFLGSVYDNTIQ 58
KLNR +TVNVL FL VY N ++
Sbjct: 85 KLNREDTVNVLKFLNDVYTNQLE 107
>UniRef50_Q00732 Cluster: p48 protein; n=16;
Nucleopolyhedrovirus|Rep: p48 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 387
Score = 69.7 bits (163), Expect = 4e-11
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = -1
Query: 493 IVPESFIRHIITKYQLDXEISLLIELNHDCFNK 395
IVPE+FIRHIITKYQLD EISLLIELNHDCFNK
Sbjct: 355 IVPETFIRHIITKYQLDNEISLLIELNHDCFNK 387
>UniRef50_Q4KSY5 Cluster: P12; n=2; Nucleopolyhedrovirus|Rep: P12 -
Chrysodeixis chalcites nucleopolyhedrovirus
Length = 117
Score = 65.7 bits (153), Expect = 7e-10
Identities = 28/78 (35%), Positives = 49/78 (62%)
Frame = -2
Query: 300 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 121
M + + LQ +N T T A +++ND P K +++++S QS A+ +LE + E I+L
Sbjct: 35 MNSAEFLQNLNQT--NTVADVILNDTNPQKRNAIRVISKQSAIAKTILEAISNEEQSIRL 92
Query: 120 NRIETVNVLDFLGSVYDN 67
N ++T+NVL + ++YDN
Sbjct: 93 NTVKTINVLQLMSNIYDN 110
>UniRef50_P24651 Cluster: p48 protein; n=7;
Nucleopolyhedrovirus|Rep: p48 protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 411
Score = 56.8 bits (131), Expect = 3e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = -1
Query: 493 IVPESFIRHIITKYQLDXEISLLIELNHDCFNK 395
IVPE+FIR II YQLD EISLL++LNHDCF++
Sbjct: 378 IVPETFIRRIIVDYQLDNEISLLLDLNHDCFDR 410
>UniRef50_Q0N414 Cluster: P12; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: P12 - Clanis bilineata
nucleopolyhedrosis virus
Length = 120
Score = 49.6 bits (113), Expect = 5e-05
Identities = 23/73 (31%), Positives = 44/73 (60%)
Frame = -2
Query: 285 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 106
M+ T+N + + A+L++ND + K S ++LS S A+N+ + + + ++LN +
Sbjct: 47 MVNTLNEYTN-SLATLILNDESAKKRVSFEVLSKSSAAAKNIFKDIVDDRDAVRLNTLRA 105
Query: 105 VNVLDFLGSVYDN 67
V+VL L ++YDN
Sbjct: 106 VSVLRLLSNIYDN 118
>UniRef50_Q9YMM4 Cluster: LdOrf-103 peptide; n=1; Lymantria dispar
MNPV|Rep: LdOrf-103 peptide - Lymantria dispar
multicapsid nuclear polyhedrosis virus (LdMNPV)
Length = 121
Score = 48.8 bits (111), Expect = 8e-05
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = -2
Query: 285 MLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 106
++ +N S A +L ND + NK ++ LS S A+++L +Q N+ ++L+ +
Sbjct: 45 LINALNDNMSSVALHIL-NDTSENKADTFGKLSRTSAVAKSILADIQDNQETMRLDAAKG 103
Query: 105 VNVLDFLGSVYDNTIQ 58
V VL L ++YDNTI+
Sbjct: 104 VAVLQLLNNIYDNTIR 119
>UniRef50_Q287K2 Cluster: P12; n=3; Nucleopolyhedrovirus|Rep: P12 -
Agrotis segetum nuclear polyhedrosis virus (AsNPV)
Length = 113
Score = 48.0 bits (109), Expect = 1e-04
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = -2
Query: 300 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKL 121
M A +L ++N T T A L++ND +K S+ ++ S A+ +L+ + E+ ++L
Sbjct: 32 MWADQLLNSLNETT--TVADLILNDTDEHKRISMGVIGQHSAIAKTILDYIDEEES-LRL 88
Query: 120 NRIETVNVLDFLGSVYDNTI 61
+ T+NVL + +YDN I
Sbjct: 89 GTVNTINVLKLMSDIYDNKI 108
>UniRef50_Q99GV9 Cluster: ORF93; n=3; Nucleopolyhedrovirus|Rep:
ORF93 - Helicoverpa zea SNPV
Length = 122
Score = 47.2 bits (107), Expect = 2e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -2
Query: 306 TQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKI 127
+++ + +Q++N T AS ++ D TP+K L IL+ QS A+ LL+ ++ KI
Sbjct: 37 SEVPIAEFVQSLNEL--DTLASTILKDPTPHKRNVLSILAKQSAVAKRLLDVIENGNDKI 94
Query: 126 KLN-RIETVNVLDFLGSVYDN 67
KLN ++ + L ++DN
Sbjct: 95 KLNGSMQAIETLRLFSDIFDN 115
>UniRef50_Q91BD5 Cluster: Putative uncharacterized protein; n=1;
Spodoptera litura NPV|Rep: Putative uncharacterized
protein - Spodoptera litura multicapsid
nucleopolyhedrovirus (SpltMNPV)
Length = 121
Score = 46.0 bits (104), Expect = 6e-04
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -2
Query: 291 VDMLQTINTTAS-QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNR 115
+D Q IN T+A ++ D + N+ E+L++LS QS A+ ++ + ++K N
Sbjct: 40 IDPSQIINELNDVNTSAHAVLTDRSDNRLETLQVLSNQSNIAKKIVTAANNRDDRVKFNV 99
Query: 114 IETVNVLDFLGSVYDN 67
+ET+ +L + +YDN
Sbjct: 100 VETMELLRLMTDLYDN 115
>UniRef50_Q80LL8 Cluster: Putative uncharacterized protein; n=1;
Adoxophyes honmai NPV|Rep: Putative uncharacterized
protein - Adoxophyes honmai nucleopolyhedrovirus
Length = 99
Score = 46.0 bits (104), Expect = 6e-04
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = -2
Query: 264 TASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFL 85
T T+A +ND + NK + LS +S A+ +L+ ++ +++ ++ N I TVN L L
Sbjct: 30 TEFNTSAKRFLNDTSKNKELYFRDLSKRSATAKKILKCIEDDQSAVQFNLISTVNFLKLL 89
Query: 84 GSVYDNTI 61
++DN +
Sbjct: 90 SDIHDNNV 97
>UniRef50_A0EYY4 Cluster: P12; n=1; Ecotropis obliqua NPV|Rep: P12 -
Ecotropis obliqua NPV
Length = 140
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = -2
Query: 297 AAVDMLQTINTTAS--QTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIK 124
+A+D + IN+ S + AS +I D + K + KILS S A+ +L+ ++ ++ +
Sbjct: 60 SAIDPVTLINSLNSNNKNMASFIIADESLKKQNTFKILSKVSSSAKGVLKDIEDDKESMP 119
Query: 123 LNRIETVNVLDFLGSVYDN 67
L + NVL L ++YDN
Sbjct: 120 LTTLRATNVLRLLSNIYDN 138
>UniRef50_Q4QDY2 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 90
Score = 35.9 bits (79), Expect = 0.60
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -3
Query: 278 KPSTPRPLKRPRRC*STTLRPIKLKV*KFCLLNLSERAICWNRCKP 141
KPS PRP++RPRRC S + PI L CL + +R C P
Sbjct: 13 KPSPPRPVERPRRC-SRPVLPIVLLQAFDCLTSAGKREKHQRGCSP 57
>UniRef50_Q55C41 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1333
Score = 33.9 bits (74), Expect = 2.4
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = -2
Query: 216 NKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQXDSYQSK 37
N S I + S G+RN +E +++ +N++ T+ ++ +GS+ +T Q S +
Sbjct: 762 NNNNSSSISNVVSGGSRNNIELFESDTFSPPINQVNTIELVPSIGSITPST-QPPSLNNS 820
Query: 36 CAFVGP 19
F+ P
Sbjct: 821 TTFISP 826
>UniRef50_Q12267 Cluster: Structural maintenance of chromosomes
protein 4; n=5; Saccharomycetales|Rep: Structural
maintenance of chromosomes protein 4 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 1418
Score = 33.9 bits (74), Expect = 2.4
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 288 DMLQTINTTASQTAASLLINDITPNKTESLKI-LSTQSVGARNLLEPMQANETKIKLNRI 112
D L+ I T +L ND N+T +LK+ L QS + +E M+ + + K I
Sbjct: 1028 DELKVIEEQLKHTKLALAENDTNMNETLNLKVELKEQSEQLKEQMEDMEESINEFKSIEI 1087
Query: 111 ETVNVLDFLGSV 76
E N L+ L S+
Sbjct: 1088 EMKNKLEKLNSL 1099
>UniRef50_Q6UPR1 Cluster: NIMA-related kinase 5; n=1; Chlamydomonas
reinhardtii|Rep: NIMA-related kinase 5 - Chlamydomonas
reinhardtii
Length = 812
Score = 32.7 bits (71), Expect = 5.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 382 YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHG 260
YGH +Q A + P G P G A GG A HHG
Sbjct: 632 YGHARQSPAPDARRPAAQYGTPPGGRAGGGYGAAAGGSHHG 672
>UniRef50_Q3LS85 Cluster: 185/333; n=79; Strongylocentrotus
purpuratus|Rep: 185/333 - Strongylocentrotus purpuratus
(Purple sea urchin)
Length = 372
Score = 32.7 bits (71), Expect = 5.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 379 GHWQQHVANTKKPPQ-QTAGKPFG----ANANGGRRHVANHQHHG 260
GH ++H + + PPQ + +PFG N GR H +H HHG
Sbjct: 166 GHGRRHHGHRQGPPQDRPEEQPFGQRNERNEEDGRPHPHHHGHHG 210
>UniRef50_A3IXJ5 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 1249
Score = 32.3 bits (70), Expect = 7.4
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 237 LINDITPNKTESLKILSTQSVGAR--NLLEPMQANETKIKLNRIETVNVLDFLGSVYD 70
L++++ K S +I +Q V R N L P + N ++L +ET+ + DF+ + YD
Sbjct: 932 LLHNLDKCKERSQRIYHSQLVKGRLGNTLTPWKHNPRYLRLKVLETIGLKDFIHNHYD 989
>UniRef50_A0D7G9 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 226
Score = 32.3 bits (70), Expect = 7.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 234 INDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLN 118
IN+ PNK+++ K ST+ + + +LE QA + IK N
Sbjct: 57 INETLPNKSKNKKSRSTEQINLKLILETWQAKQIYIKDN 95
>UniRef50_Q31FP5 Cluster: Methyl-accepting chemotaxis protein
precursor; n=1; Thiomicrospira crunogena XCL-2|Rep:
Methyl-accepting chemotaxis protein precursor -
Thiomicrospira crunogena (strain XCL-2)
Length = 330
Score = 31.9 bits (69), Expect = 9.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 210 TESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQ 58
TE KI+ ARN +E M + + +++ +++ V DFL + DN Q
Sbjct: 265 TEIQKIIEELQQRARNAVEVMGSGQERVEATQMQAGKVNDFLHEIEDNLSQ 315
>UniRef50_Q232X2 Cluster: Putative uncharacterized protein; n=4;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1503
Score = 31.9 bits (69), Expect = 9.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 336 CGGFFVFATCCCQCPYHRYHLLKQSWLSS 422
C GF + C QCP++ + KQ WL+S
Sbjct: 760 CEGFTIENKCVKQCPFYSTQMGKQCWLNS 788
>UniRef50_A5DV71 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 683
Score = 31.9 bits (69), Expect = 9.8
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 267 TTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPM--QANETKIKLNRIETVNVL 94
T +T L IN++TPN+T + LS + RN+ + NE + LN ++ V++L
Sbjct: 298 TNICETFNRLFINNLTPNETTDVSSLSLEE-QTRNVFNRLIKILNENNLSLNDVQHVDLL 356
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,106,049
Number of Sequences: 1657284
Number of extensions: 9130576
Number of successful extensions: 24315
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24268
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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