Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e06
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    24   0.99 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   3.0  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 13  SSWTDERT-LTLVTITLDRVVVNAPQKV*HVDRFDSIQLNFGLVG 144
           S W D    +T+ T+ +    +NA Q     D+   I   FGL+G
Sbjct: 70  SGWLDLYLGITIQTLGIISNCINAKQITIFFDKIQRIDKQFGLLG 114


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLS 208
           T P++   L    L N I +++  +GS    A TD   K F++S
Sbjct: 353 TFPEEVQQLAGKFLLNYIFIAVGIVGS----ACTDVEQKFFQVS 392


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 299 ICVCAEGFAGGXXXXXXXVCD 361
           IC C  GF G        +CD
Sbjct: 46  ICTCKPGFTGSNCQNRINLCD 66



 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 302 CVCAEGFAGGXXXXXXXVCD 361
           C C EGF G         CD
Sbjct: 362 CTCPEGFYGKNCEFSGYDCD 381


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 380 ISSISFIEAIMVEFDKQR 433
           ++++S +  +MV+FDK+R
Sbjct: 307 LNTVSTLLIVMVQFDKER 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,660
Number of Sequences: 336
Number of extensions: 2342
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)