Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e04
         (578 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    79   7e-14
UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1; ...    32   8.5  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 79.0 bits (186), Expect = 7e-14
 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -3

Query: 273 MGFFTALIVNIVGGAVLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXSYYGNLMAGSI 97
           MG   AL VN+VGGA++   GG L PIVAP+LGF               +YYGN++AGS+
Sbjct: 1   MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60

Query: 96  ISKLTAAAMIAPTP 55
           IS+LT+AAM+APTP
Sbjct: 61  ISQLTSAAMLAPTP 74


>UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 665

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 118 EFNGRKHYIKVDCRRHDSTNSISLSKTDNC 29
           EFNGR HY+ V  +  DST+++  +   NC
Sbjct: 593 EFNGRTHYVLVLSKGGDSTDAVHYTMRQNC 622


>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 887

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 179 PSRGATIGIKNP-PMQRTAPPTMLTIRAV-KNPMILKSQ*LLT 301
           PS GA    ++P P    AP    T+R V KNP +LKS  LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781


>UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 108

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = -3

Query: 321 LICIVYLVRSYCDLRIMGFFTALIVN-------IVGGAVLCMGGFLIPIVAPLLG 178
           LIC++Y++ S+  +  +G  TAL  N       I G A++ +  F+I I++ +LG
Sbjct: 18  LICMIYIIYSWMSITNVGVVTALTHNNGDAMLLIFGAAIVLIVFFIIDIISLILG 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,669,271
Number of Sequences: 1657284
Number of extensions: 9256783
Number of successful extensions: 22565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22559
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)