Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e04
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   2.7  
04_04_0500 - 25677767-25680850                                         28   6.2  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   8.2  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    27   8.2  

>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 158 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 36
           W EAL L P  + G   P +LYQ  L  P   +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 256 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 158
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 214 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 104
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 336 KDYQVLICIVYLVRSYCDLRIMGFFTALIVNIV 238
           KD +++IC +Y V S C   IM   +  IV IV
Sbjct: 139 KDIEIVICFIYAVDSVCSRLIMLQSSLDIVMIV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,434
Number of Sequences: 37544
Number of extensions: 263443
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)