Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e03
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   6.6  
03_01_0075 - 618917-618980,619752-619818,619874-620029,620237-62...    27   8.7  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 137  SGSVNLIAHGLE--LNDPPKKPPICDVPKVILLETSTFNLLI 256
            S   N + H L+  +  PP KPP C++P  +     +  LL+
Sbjct: 1894 SSKPNKLPHWLQEAVRAPPSKPPECELPATVSAIAQSVCLLL 1935


>03_01_0075 -
           618917-618980,619752-619818,619874-620029,620237-620315,
           620797-620961,621070-621147,621327-621391,621433-621517,
           621864-621920,622303-622386,622568-622650,623104-623164,
           623292-623357,623468-623595,623696-623741
          Length = 427

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 215 KVILLETSTFNLLIVLEFTVKKCHRVRYN 301
           KV LL+  TF+L ++ EF  K+C R+ ++
Sbjct: 384 KVFLLKQVTFSLKMISEFRSKRC-RIHFS 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,320
Number of Sequences: 37544
Number of extensions: 173469
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)