Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15e03
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 30 0.85
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 28 2.6
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 28 2.6
AF016443-3|AAC24281.1| 395|Caenorhabditis elegans Hypothetical ... 27 6.0
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 7.9
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 27 7.9
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 7.9
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 242 FNLLIVLEFTVKKCHRVRYN*WSPGNRNSTIINWNCKLVQYYDCIL--YFYNHKF 400
F LL + +F + R + N W +N TI+N+ V +YDC+ NHK+
Sbjct: 472 FELLQLPDFLIITYKRFQKNQWFV-EKNPTIVNFPIANVDFYDCLAKDARANHKY 525
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 209 VPKVILLETSTFNLLIVLEFTVKKCHRVRYN 301
+P +++L + + N+ I EFT KC V +N
Sbjct: 201 IPFLLILISFSVNIPIFFEFTTTKCFNVEHN 231
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 209 VPKVILLETSTFNLLIVLEFTVKKCHRVRYN 301
+P +++L + + N+ I EFT KC V +N
Sbjct: 243 IPFLLILISFSVNIPIFFEFTTTKCFNVEHN 273
>AF016443-3|AAC24281.1| 395|Caenorhabditis elegans Hypothetical
protein C17E7.7 protein.
Length = 395
Score = 27.1 bits (57), Expect = 6.0
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 170 ELNDPPKKPPICDVPKVILLETSTFNLLIVLEFTVKKCHRVRYN*WSPGNRNSTIINWNC 349
+ PK+ CD K+ T L E+T K C N + + +STI C
Sbjct: 61 DFGSQPKQVLTCDACKMFFRRVVTEKL----EYTCK-CSN---NCFEGFSEDSTIYP-KC 111
Query: 350 KLVQYYDCILYFYNHKFRR 406
K +Y +C+ + N+ FR+
Sbjct: 112 KSCRYQECLKFGMNYAFRK 130
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 246 LKVLVSNKITLGTSQIGGFFGGSFNSKPCAIK-FTDPL 136
L+VLVS KI T + GS S PCA++ + DP+
Sbjct: 4130 LEVLVSPKIITSTPGVLTPSSGSKFSLPCAVRGYPDPI 4167
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 246 LKVLVSNKITLGTSQIGGFFGGSFNSKPCAIK-FTDPL 136
L+VLVS KI T + GS S PCA++ + DP+
Sbjct: 4130 LEVLVSPKIITSTPGVLTPSSGSKFSLPCAVRGYPDPI 4167
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 246 LKVLVSNKITLGTSQIGGFFGGSFNSKPCAIK-FTDPL 136
L+VLVS KI T + GS S PCA++ + DP+
Sbjct: 4130 LEVLVSPKIITSTPGVLTPSSGSKFSLPCAVRGYPDPI 4167
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 246 LKVLVSNKITLGTSQIGGFFGGSFNSKPCAIK-FTDPL 136
L+VLVS KI T + GS S PCA++ + DP+
Sbjct: 4130 LEVLVSPKIITSTPGVLTPSSGSKFSLPCAVRGYPDPI 4167
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 219 TLGTSQIGGFFGGSFNSKPCAIKFTDPLT 133
T TS GG FG F KP + F P T
Sbjct: 369 TKETSTSGGTFGSGFGGKPTSTGFGAPST 397
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 246 LKVLVSNKITLGTSQIGGFFGGSFNSKPCAIK-FTDPL 136
L+VLVS KI T + GS S PCA++ + DP+
Sbjct: 4130 LEVLVSPKIITSTPGVLTPSSGSKFSLPCAVRGYPDPI 4167
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 219 TLGTSQIGGFFGGSFNSKPCAIKFTDPLT 133
T TS GG FG F KP + F P T
Sbjct: 369 TKETSTSGGTFGSGFGGKPTSTGFGAPST 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,907
Number of Sequences: 27780
Number of extensions: 179575
Number of successful extensions: 380
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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