Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e02
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   343   1e-96
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   343   1e-96
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  343 bits (842), Expect = 1e-96
 Identities = 159/198 (80%), Positives = 174/198 (87%)
 Frame = -2

Query: 691 GGVDKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNC 512
           GGVDK TQF RYF           ATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC
Sbjct: 103 GGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNC 162

Query: 511 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTV 332
           ++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222

Query: 331 TTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 152
           TTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LR
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282

Query: 151 GTGGAFVLVLYDEIKKVL 98
           GTGGA VLVLYDEIK +L
Sbjct: 283 GTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -2

Query: 541 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 368
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 367 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 200
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 199 EGTSAFFKG 173
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 349 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 176
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 175 GAFSNVLR 152
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  343 bits (842), Expect = 1e-96
 Identities = 159/198 (80%), Positives = 174/198 (87%)
 Frame = -2

Query: 691 GGVDKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNC 512
           GGVDK TQF RYF           ATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC
Sbjct: 103 GGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNC 162

Query: 511 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTV 332
           ++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222

Query: 331 TTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 152
           TTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LR
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282

Query: 151 GTGGAFVLVLYDEIKKVL 98
           GTGGA VLVLYDEIK +L
Sbjct: 283 GTGGALVLVLYDEIKNLL 300



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = -2

Query: 541 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 368
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 367 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 200
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 199 EGTSAFFKG 173
           +G +  ++G
Sbjct: 170 DGITGLYRG 178



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 349 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 176
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 175 GAFSNVLR 152
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 108 LISSYKTSTKAPPVPLRTLEKAPL 179
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 10  SWSNNT*SEGSGCDTESHRNYGNNSY 87
           S SNNT    +     ++ NY NN+Y
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 10  SWSNNT*SEGSGCDTESHRNYGNNSY 87
           S SNNT    +     ++ NY NN+Y
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNNNY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,530
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)