Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15e01
(152 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 22 0.48
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 0.48
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 22 0.48
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 0.48
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 20 2.0
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 20 2.0
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 19 3.4
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 19 3.4
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 19 3.4
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 19 4.5
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 19 4.5
EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock prote... 19 6.0
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 19 6.0
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 22.2 bits (45), Expect = 0.48
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 144 LPACNAPSASACFLHLTLSYNLLVNFFNPPP 52
+ AC + CF H T+ L FF PP
Sbjct: 424 IAACGLRNGDPCFFHDTIPPYL---FFESPP 451
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 22.2 bits (45), Expect = 0.48
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 144 LPACNAPSASACFLHLTLSYNLLVNFFNPPP 52
+ AC + CF H T+ L FF PP
Sbjct: 424 IAACGLRNGDPCFFHDTIPPYL---FFESPP 451
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 22.2 bits (45), Expect = 0.48
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 144 LPACNAPSASACFLHLTLSYNLLVNFFNPPP 52
+ AC + CF H T+ L FF PP
Sbjct: 424 IAACGLRNGDPCFFHDTIPPYL---FFESPP 451
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 22.2 bits (45), Expect = 0.48
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 144 LPACNAPSASACFLHLTLSYNLLVNFFNPPP 52
+ AC + CF H T+ L FF PP
Sbjct: 424 IAACGLRNGDPCFFHDTIPPYL---FFESPP 451
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 20.2 bits (40), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 8 ENVPLGILKINDNLEGGGLKKFT 76
+N P+GIL + GG K+ +
Sbjct: 207 QNTPIGILGRIKGISGGEKKRLS 229
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 20.2 bits (40), Expect = 2.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 8 ENVPLGILKINDNLEGGGLKKFT 76
+N P+GIL + GG K+ +
Sbjct: 207 QNTPIGILGRIKGISGGEKKRLS 229
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 19.4 bits (38), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = +2
Query: 50 EGGGLKKFTSKLYDNVRCKKHADALGALHAGRC 148
+GG K + K D+ KK AG C
Sbjct: 80 DGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLC 112
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 19.4 bits (38), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = +2
Query: 50 EGGGLKKFTSKLYDNVRCKKHADALGALHAGRC 148
+GG K + K D+ KK AG C
Sbjct: 28 DGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLC 60
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 19.4 bits (38), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = +2
Query: 50 EGGGLKKFTSKLYDNVRCKKHADALGALHAGRC 148
+GG K + K D+ KK AG C
Sbjct: 211 DGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLC 243
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 19.0 bits (37), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 20 LGILKINDNLEGGGLKKFTSKLYDNVRCKKHAD 118
L L N + GGL+ +KL+ + C AD
Sbjct: 1063 LTFLGANAQDDEGGLEFSVNKLFKCMICTYKAD 1095
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 19.0 bits (37), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 20 LGILKINDNLEGGGLKKFTSKLYDNVRCKKHAD 118
L L N + GGL+ +KL+ + C AD
Sbjct: 1063 LTFLGANAQDDEGGLEFSVNKLFKCMICTYKAD 1095
>EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock protein
90 protein.
Length = 721
Score = 18.6 bits (36), Expect = 6.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 59 GLKKFTSKLYDNVRCKKHADA 121
G KKF + N++ H D+
Sbjct: 422 GYKKFYEQFSKNIKLGIHEDS 442
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 18.6 bits (36), Expect = 6.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -3
Query: 102 HLTLSYNLLVNFFNPP 55
H+ +S+N L+N P
Sbjct: 194 HVNMSHNKLINLVVAP 209
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,995
Number of Sequences: 336
Number of extensions: 483
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 31
effective length of database: 112,169
effective search space used: 2131211
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
- SilkBase 1999-2023 -