Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e01
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0392 + 24891478-24891612,24891875-24893092                       27   1.6  
11_01_0605 + 4821363-4823246                                           27   2.1  
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75...    27   2.1  
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941           26   3.6  
02_04_0580 + 24065830-24065967,24066163-24067425                       26   4.8  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    25   6.3  

>04_04_0392 + 24891478-24891612,24891875-24893092
          Length = 450

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 17  PLGILKINDNLEGGGLKKFTSKLYDNVRCKKHADALGALHA 139
           PLG   I D    GG+KKF S  Y N  C      +G L A
Sbjct: 21  PLGY-SIEDVRPAGGVKKFQSAAYSN--CSDQPAPMGVLSA 58


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 144 LPACNAPSA----SACFLHLTLSYNLLVNFFNPPPSRLS 40
           LP C   +A    S C LH   S NL  N F   PS+LS
Sbjct: 89  LPGCGLSNATILASICNLHTLRSLNLSRNSFTDLPSQLS 127


>09_01_0041 +
           746494-746691,747301-747495,750509-750631,751457-751636,
           752772-753058,754343-754907
          Length = 515

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 150 QHLPACNAPSASACFLH--LTLSYNLLVNFFNPPPSRLSLIFKIP 22
           Q   +CN  S + C+LH  L L  +    F + PP R++   + P
Sbjct: 66  QQSSSCNYSSRAGCYLHPYLKLKTSAATCFGSLPPFRIAADLRFP 110


>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
          Length = 234

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 99 LTLSYNLLVNFFNPPPSRLSLIF 31
          +TL Y+ L+N F PPP+  + ++
Sbjct: 25 VTLLYSPLLNLFTPPPATTTTLY 47


>02_04_0580 + 24065830-24065967,24066163-24067425
          Length = 466

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 17 PLGILKINDNLEGGGLKKFTSKLYDNV 97
          PLG   I D    GG+KKF S  Y N+
Sbjct: 22 PLGY-SIEDLRPAGGIKKFRSAAYSNL 47


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 56  GGLKKFTSKLYDNVRCKKHADALGALHAGRCC 151
           G   K+   +  ++    HA A GALH G  C
Sbjct: 210 GSANKYAGSMAMDIDQSVHAPANGALHTGDSC 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,584
Number of Sequences: 37544
Number of extensions: 52253
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)