Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e01
         (152 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L78440-1|AAB05605.1|  748|Homo sapiens signal transducer and act...    29   2.8  
BC031212-1|AAH31212.1|  748|Homo sapiens STAT4 protein protein.        29   2.8  
AF423072-1|AAL12164.1|  652|Homo sapiens signal transducer and a...    29   2.8  
AC067945-3|AAY24184.1|  657|Homo sapiens unknown protein.              29   2.8  
AB209043-1|BAD92280.1|  332|Homo sapiens signal transducer and a...    29   2.8  

>L78440-1|AAB05605.1|  748|Homo sapiens signal transducer and
           activator of transcription 4 protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 PSASACFLHLTLSYN---LLVNFFNPPPSRLSLIFKIPKGTFSNY 1
           P+A A  +   +S N    LV F NPPP+ LS + ++    FS+Y
Sbjct: 461 PNAWASIIWYNVSTNDSQNLVFFNNPPPATLSQLLEVMSWQFSSY 505


>BC031212-1|AAH31212.1|  748|Homo sapiens STAT4 protein protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 PSASACFLHLTLSYN---LLVNFFNPPPSRLSLIFKIPKGTFSNY 1
           P+A A  +   +S N    LV F NPPP+ LS + ++    FS+Y
Sbjct: 461 PNAWASIIWYNVSTNDSQNLVFFNNPPPATLSQLLEVMSWQFSSY 505


>AF423072-1|AAL12164.1|  652|Homo sapiens signal transducer and
           activator of transcription 4 protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 PSASACFLHLTLSYN---LLVNFFNPPPSRLSLIFKIPKGTFSNY 1
           P+A A  +   +S N    LV F NPPP+ LS + ++    FS+Y
Sbjct: 365 PNAWASIIWYNVSTNDSQNLVFFNNPPPATLSQLLEVMSWQFSSY 409


>AC067945-3|AAY24184.1|  657|Homo sapiens unknown protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 PSASACFLHLTLSYN---LLVNFFNPPPSRLSLIFKIPKGTFSNY 1
           P+A A  +   +S N    LV F NPPP+ LS + ++    FS+Y
Sbjct: 370 PNAWASIIWYNVSTNDSQNLVFFNNPPPATLSQLLEVMSWQFSSY 414


>AB209043-1|BAD92280.1|  332|Homo sapiens signal transducer and
           activator of transcription 4 variant protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 PSASACFLHLTLSYN---LLVNFFNPPPSRLSLIFKIPKGTFSNY 1
           P+A A  +   +S N    LV F NPPP+ LS + ++    FS+Y
Sbjct: 111 PNAWASIIWYNVSTNDSQNLVFFNNPPPATLSQLLEVMSWQFSSY 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,369
Number of Sequences: 237096
Number of extensions: 257672
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 76,859,062
effective HSP length: 30
effective length of database: 69,746,182
effective search space used: 1394923640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)