Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e01
         (152 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1292|AAF52524.2| 1983|Drosophila melanogaster CG6630-PA...    28   1.5  
AY061220-1|AAL28768.1|  512|Drosophila melanogaster LD16414p pro...    26   6.2  
AE014296-840|AAO41216.1|  512|Drosophila melanogaster CG7447-PB,...    26   6.2  
AE014296-839|AAF47894.2|  512|Drosophila melanogaster CG7447-PA,...    26   6.2  

>AE014134-1292|AAF52524.2| 1983|Drosophila melanogaster CG6630-PA
            protein.
          Length = 1983

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 111  CFLHLTLSYNLLVNFFNPPPSRLSLIFKIPKGT 13
            C+ HLT +YN +V  +      +  ++K PK T
Sbjct: 1914 CYEHLTQAYNKIVEMYFEEDHAIEFVYKEPKLT 1946


>AY061220-1|AAL28768.1|  512|Drosophila melanogaster LD16414p
           protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 90  SYNLLVNFFNPPPSRLSLIFKIPKG 16
           +YN++ N F PPP  + L  +  KG
Sbjct: 121 TYNIMTNTFGPPPPPMPLSPRYGKG 145


>AE014296-840|AAO41216.1|  512|Drosophila melanogaster CG7447-PB,
           isoform B protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 90  SYNLLVNFFNPPPSRLSLIFKIPKG 16
           +YN++ N F PPP  + L  +  KG
Sbjct: 121 TYNIMTNTFGPPPPPMPLSPRYGKG 145


>AE014296-839|AAF47894.2|  512|Drosophila melanogaster CG7447-PA,
           isoform A protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 90  SYNLLVNFFNPPPSRLSLIFKIPKG 16
           +YN++ N F PPP  + L  +  KG
Sbjct: 121 TYNIMTNTFGPPPPPMPLSPRYGKG 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,068,800
Number of Sequences: 53049
Number of extensions: 87617
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 24,988,368
effective HSP length: 31
effective length of database: 23,343,849
effective search space used: 443533131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)