Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e01
         (152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68115-7|CAA92169.2|  302|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z50873-4|CAA90762.2|  302|Caenorhabditis elegans Hypothetical pr...    25   5.5  
DQ645955-1|ABG36763.1|  302|Caenorhabditis elegans molting prote...    25   5.5  
AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z81117-3|CAB03318.1|  334|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    25   9.6  

>Z68115-7|CAA92169.2|  302|Caenorhabditis elegans Hypothetical
          protein F19H6.1 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = -3

Query: 78 LVNFFNPPPSRLSL-IF----KIPKGTFS 7
          + NF +PPP +LSL +F    KI KG FS
Sbjct: 7  IYNFDDPPPDKLSLELFIIEKKIGKGQFS 35


>Z50873-4|CAA90762.2|  302|Caenorhabditis elegans Hypothetical
          protein F19H6.1 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = -3

Query: 78 LVNFFNPPPSRLSL-IF----KIPKGTFS 7
          + NF +PPP +LSL +F    KI KG FS
Sbjct: 7  IYNFDDPPPDKLSLELFIIEKKIGKGQFS 35


>DQ645955-1|ABG36763.1|  302|Caenorhabditis elegans molting
          protein MLT-1 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = -3

Query: 78 LVNFFNPPPSRLSL-IF----KIPKGTFS 7
          + NF +PPP +LSL +F    KI KG FS
Sbjct: 7  IYNFDDPPPDKLSLELFIIEKKIGKGQFS 35


>AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical
           protein W10G11.19 protein.
          Length = 508

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 141 PACNAPSASACFLHLTLSYNLLVNFFNPPPSRLSLIFK 28
           P C+  S+ + FL  T +   LV FF+P  S+ S  FK
Sbjct: 355 PGCHQLSSPSDFLFATGTQKPLVVFFDPLDSKNSEGFK 392


>Z81117-3|CAB03318.1|  334|Caenorhabditis elegans Hypothetical
           protein T06E6.9 protein.
          Length = 334

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 111 CFL-HLTLSYNLLVNFFNPPPSRLSLIFKIPKGTF 10
           CF  ++ + Y+   N++NP  +    IF   +G+F
Sbjct: 249 CFTPYVYMLYSCFTNYYNPIANNFIFIFVAARGSF 283


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 150 QHLPACNAPSASAC 109
           Q +P CN PSA AC
Sbjct: 251 QCIPLCNQPSAPAC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,910
Number of Sequences: 27780
Number of extensions: 43069
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)