Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15e01
         (152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.086
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   2.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   5.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   5.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   7.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    18   9.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.086
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  INDNLEGGGLKKFTSKLYDNVRCK 106
           ++  +EG G+ +  S L DN++C+
Sbjct: 220 VSSKVEGNGVHEENSPLEDNIKCE 243


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 72   NFFNPPP 52
            NF+NPPP
Sbjct: 1162 NFWNPPP 1168


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 111 CFLHLTLSYNLLVNFFNPPPSRLSLIFKIPKGT 13
           C L    +  L+ + F+   + +  IFKI K T
Sbjct: 37  CVLQANRACILIKDLFDNVHNHIQNIFKIIKST 69


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 111 CFLHLTLSYNLLVNFFNPPPSRLSLIFKIPKGT 13
           C L    +  L+ + F+   + +  IFKI K T
Sbjct: 20  CVLQANRACILIKDLFDNVHNHIQNIFKIIKST 52


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 87  YNLLVNFFNPPPSRLSLIFK 28
           ++++ N + P P  +  IFK
Sbjct: 644 FDIIQNIYIPEPQDIENIFK 663


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +3

Query: 39  MIISKEVD*RNLLVNYMIM*DVRSMQTRLVRCT 137
           +I S EV       NY +   +  ++  ++ CT
Sbjct: 503 LITSSEVRQPGKAPNYSVNWTIGQLEAEVINCT 535


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 123 SASACFLHLTLSYNLLVNFFNPPPSRL 43
           S + CF+    + +LLV     PP+ L
Sbjct: 70  SVTNCFVSSLAAADLLVGLAVMPPAVL 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,971
Number of Sequences: 438
Number of extensions: 679
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)