Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d23
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   171   6e-44
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   167   9e-43
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    29   0.33 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.3  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   1.8  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   3.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   5.4  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   7.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.2  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.5  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  171 bits (416), Expect = 6e-44
 Identities = 90/180 (50%), Positives = 122/180 (67%), Gaps = 4/180 (2%)
 Frame = -2

Query: 530 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 351
           MGIDI   H RK +R++  S+++              RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 350 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 177
           IS+S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 176 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKAR 3
           E+LT DQLALRAPTG  TVL++G+++AREA RHFG     P  H  PYVR++G   E+AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  167 bits (406), Expect = 9e-43
 Identities = 87/180 (48%), Positives = 121/180 (67%), Gaps = 4/180 (2%)
 Frame = -2

Query: 530 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 351
           MGIDI   H +K +R++  S+++              RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 350 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 177
           IS+S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 176 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKAR 3
           E+LT DQLALRAPTG  TVLV+G+++AREA RHFG     P  H  PYVR++G   E+AR
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERAR 177


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 299 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 123
           L+ +VV  +TNDVRL++I  +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 122 VLVQGQRNAREAVRHFGPAPG 60
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 266 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 153
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 165 SKNFSSSSQNACTSFFGNMKSSHRH 239
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 187 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 47
           LL   F+ ++ ++  LRL   +     WY ++++L+ +C T   +   RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 168 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 281
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +3

Query: 33  IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 197
           +G S+ A    W RA +  C   I   L+ +  +    TK   +      KN SS++  A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363

Query: 198 CTSFF 212
           C+SFF
Sbjct: 364 CSSFF 368


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 12  FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 173
           F+S G  IG ++             C++ I+++ Y Y LL    T S LI +++
Sbjct: 631 FLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 161 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 66
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 93  TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC 272
           +S S + +   + +S ST S  + S + SSSS+ A +S   +  SSH+       S    
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPV 419

Query: 273 DCPHYHGNQTLTS 311
               YH + +  S
Sbjct: 420 SSAFYHNSTSSRS 432


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 127 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 38
           R  +YK SE ++ Q   + +LQ+  ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 126 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 305
           L+A  ST S   K     S  +     F    K S    RYL Q   IC+ P  +   +L
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112

Query: 306 T 308
           +
Sbjct: 113 S 113


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 134 GKKTVLVQGQRNAREAVRHFGPAPGA-PR 51
           G+   L Q +R     V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 176 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 84
           E+L  D  +L  P+GK T LV    + +  +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,495
Number of Sequences: 5004
Number of extensions: 49035
Number of successful extensions: 165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)