Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d22
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 0.73
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 29 0.73
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 1.7
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.2
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 6.8
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 6.8
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 9.0
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.7 bits (61), Expect = 0.73
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -1
Query: 628 IQNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQ 449
I D +KID LT+KL VAN AE N +L A E + + + + +E Q
Sbjct: 615 ILRDSASKIDSLTEKLKVAN---AEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQ 671
Query: 448 LAN 440
N
Sbjct: 672 STN 674
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/76 (19%), Positives = 37/76 (48%)
Frame = -1
Query: 625 QNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQL 446
QND++ D+L + ++ E ++ +N +R+ + ++ N+R+ ++
Sbjct: 18 QNDLVRSSDELLNHRAIQESEQIETAADALITSNIGHRSRQRKKKTKK-ATNSRKPLSKF 76
Query: 445 ANRMADIAQDVIAKPS 398
+ ++ +D I KPS
Sbjct: 77 QSNTEEVNEDPILKPS 92
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.97
Identities = 27/114 (23%), Positives = 53/114 (46%)
Frame = +3
Query: 279 TSLEPNRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 458
+SL + +PS +S PTS ++ S ++ + + + S+ L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235
Query: 459 SRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITS 620
S + S + S+S +T SL++ S AS+ S+ +++ SS + TS
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTS 285
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -1
Query: 565 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 440
DL +ANR L ANE + +RD R+D + +R+ QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -1
Query: 343 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 185
++ R + RS+GR ++ + + +PN+ N L+ V+ IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 336 CARKNDRWAAA*NDW 292
C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 6.8
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = -1
Query: 334 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 182
+P ++L + ++ + S++ +P S +N + ++E +P K K N
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225
Query: 181 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 83
IT Y L N++GST++ AR + RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -1
Query: 535 LFANEMIVARRDAETARQDCE 473
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 402 GLAITSCAMSAMRLASCAVSRRAFSQS 482
GL+ + A M A C++S AF+QS
Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQS 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,137
Number of Sequences: 5004
Number of extensions: 44558
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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