Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d21
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   0.58 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   1.3  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   4.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    23   5.4  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    23   5.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   7.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    23   7.2  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    22   9.5  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    22   9.5  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    22   9.5  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 146 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 48
           WSTS    ++LL I   +  P SK L   +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 128 SAATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXD 18
           SA TLL IA+ L +      ++ +K LW C    K D
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDCLDDVKDD 574


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 97  VYHGHFRNFYAQQ*NRC 47
           + HG +++FY    NRC
Sbjct: 516 ILHGGYKSFYENHKNRC 532


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  NDFTAERKNFENGRDKL 99
           N+ T  RKNF N RD L
Sbjct: 787 NNLTEARKNFSNYRDCL 803


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 437

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 62 AVKSLWPCPSIGKXDNLR 9
          A++SLWP PS+ +  + R
Sbjct: 23 ALRSLWPPPSLNESGDTR 40


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 120 NVINYCEQFITAIFEIFTLSSKIVVAVPVN-WE 25
           N+IN    FIT +      + ++V+ +P N W+
Sbjct: 116 NIINIIVVFITTLLTCLAFAIELVLFLPHNTWQ 148


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 13  KLSXFPIDGHGHNDFTAERKNFENGRDKLF 102
           + + F    + HND+T     F+N +   F
Sbjct: 29  RFNEFDNSQNDHNDYTQNNAQFQNAQTTTF 58


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 94  YHGHFRNFYAQQ*NRC 47
           Y G+F  FYA +  RC
Sbjct: 432 YKGNFSQFYATREERC 447


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 107 IANSLSRPFSKFLRSAVKSLWPCPSIGKXDNLR 9
           I   LS P+SK++       WP  S    DN R
Sbjct: 19  IQKDLSEPYSKYVYRYFVHQWPEFSFVALDNDR 51


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 31  IDGHGHNDFTAERKNFENGRDKLFAIVNNV 120
           ID  GH DF++E  +     D  F +V+ V
Sbjct: 99  IDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,275
Number of Sequences: 5004
Number of extensions: 8414
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)