Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d21
         (163 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069276-1|AAL39421.1|  363|Drosophila melanogaster GM10839p pro...    26   6.2  
AE014135-85|AAF59342.1| 1406|Drosophila melanogaster CG2009-PA p...    26   6.2  
Y14999-1|CAB40628.1| 1408|Drosophila melanogaster Bip2 protein p...    26   8.1  
AJ292191-1|CAC34474.1| 1408|Drosophila melanogaster TAFII155 pro...    26   8.1  
AJ251945-1|CAB64265.1| 1406|Drosophila melanogaster BIP2 protein...    26   8.1  

>AY069276-1|AAL39421.1|  363|Drosophila melanogaster GM10839p
           protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 122 ATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXDN 15
           A  + IA S SRP S ++ +    +W CP+ GK D+
Sbjct: 275 ANAMQIAES-SRP-SSYVDAEGNRIWICPACGKVDD 308


>AE014135-85|AAF59342.1| 1406|Drosophila melanogaster CG2009-PA
            protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 122  ATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXDN 15
            A  + IA S SRP S ++ +    +W CP+ GK D+
Sbjct: 1318 ANAMQIAES-SRP-SSYVDAEGNRIWICPACGKVDD 1351


>Y14999-1|CAB40628.1| 1408|Drosophila melanogaster Bip2 protein
            protein.
          Length = 1408

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 122  ATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXD 18
            A  + IA S SRP S ++ +    +W CP+ GK D
Sbjct: 1320 ANAMQIAES-SRP-SSYVDTEGNRIWICPACGKVD 1352


>AJ292191-1|CAC34474.1| 1408|Drosophila melanogaster TAFII155 protein
            protein.
          Length = 1408

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 122  ATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXD 18
            A  + IA S SRP S ++ +    +W CP+ GK D
Sbjct: 1320 ANAMQIAES-SRP-SSYVDTEGNRIWICPACGKVD 1352


>AJ251945-1|CAB64265.1| 1406|Drosophila melanogaster BIP2 protein
            protein.
          Length = 1406

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 122  ATLLTIANSLSRPFSKFLRSAVKSLWPCPSIGKXD 18
            A  + IA S SRP S ++ +    +W CP+ GK D
Sbjct: 1318 ANAMQIAES-SRP-SSYVDAEGNRIWICPACGKVD 1350


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,721,210
Number of Sequences: 53049
Number of extensions: 85362
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 24,988,368
effective HSP length: 34
effective length of database: 23,184,702
effective search space used: 440509338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)