Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d21
         (163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    25   5.5  
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    25   9.6  

>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 162 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE 25
           K Y   +DES + ++V +  E  + A+F + T    +++     W+
Sbjct: 338 KGYYKALDESKWLNHVQSILEGAVKAVFNVDTEKQSVLIHCSDGWD 383


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 28  PIDGHGHNDFTAERKNFENGRDKLFAIVNNV 120
           P+  H HN+F  E K F  G +    ++NN+
Sbjct: 365 PVRAHAHNEFLNE-KVFLRGVEIFETLINNL 394


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 162 KTYVNLVDESAFGSNVINYCEQ 97
           K++VN  D  A   N+ NYC Q
Sbjct: 184 KSFVNSADVQAVLGNLTNYCGQ 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,331
Number of Sequences: 27780
Number of extensions: 46601
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)