Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d21
         (163 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   0.26 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    18   9.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 147 LVDESAFGSNVINYCEQ-FITAIFEIF 70
           +VD S  G+ ++NY    F++A+F  F
Sbjct: 559 IVDSSTSGATIVNYSIMIFLSAVFISF 585


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 95  LSRPFSKFLRSAVKSLWPCPSIG 27
           +SRP  K  R A KS  P P  G
Sbjct: 346 MSRPSDKEEREAQKSQKPSPVTG 368


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 10  LKLSXFPIDGHGHNDFTAERKNFENG 87
           L +     DGH  ND    R+   NG
Sbjct: 60  LNIDWSTADGHPVNDVPGVRRVLRNG 85


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 10  LKLSXFPIDGHGHNDFTAERKNFENG 87
           L +     DGH  ND    R+   NG
Sbjct: 60  LNIDWSTADGHPVNDVPGVRRVLRNG 85


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 29   QLTGTATTILLLSVKI 76
            Q+T TATT   L++K+
Sbjct: 1371 QITLTATTTNSLTMKV 1386


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 111 NYCEQFITAIFEIFTLSSKIVVAV 40
           ++C     A F +F L  +I VAV
Sbjct: 77  SHCMTITFASFLLFILLVQIAVAV 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,187
Number of Sequences: 438
Number of extensions: 563
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)