Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d20
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 171 3e-43
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 171 3e-43
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.0
02_01_0295 - 1973115-1973404,1974138-1974663 29 2.0
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 2.7
02_05_0956 - 33064104-33066425 28 4.7
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 6.2
10_05_0115 - 9300918-9300972,9301299-9301396,9301476-9301556,930... 27 8.2
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 171 bits (417), Expect = 3e-43
Identities = 96/169 (56%), Positives = 113/169 (66%), Gaps = 4/169 (2%)
Frame = -2
Query: 563 LTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT 390
LT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLT
Sbjct: 68 LTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLT 127
Query: 389 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRL 216
D PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK+ + KAPKIQRL
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRL 183
Query: 215 VTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 69
VTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 184 VTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 171 bits (416), Expect = 3e-43
Identities = 95/169 (56%), Positives = 114/169 (67%), Gaps = 4/169 (2%)
Frame = -2
Query: 563 LTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT 390
LT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLT
Sbjct: 68 LTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLT 127
Query: 389 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRL 216
D PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK+ + KAPKIQRL
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRL 183
Query: 215 VTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 69
VTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 184 VTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -2
Query: 371 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 213
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -2
Query: 527 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 354
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 353 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 264
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 114 CTEKEGIQGASPGRDQTQAVSFN 46
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 270 LGWEHAFDDITTYIIFFAKV 329
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 240 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 419
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 420 A 422
+
Sbjct: 160 S 160
>10_05_0115 -
9300918-9300972,9301299-9301396,9301476-9301556,
9301635-9301726,9301832-9301859
Length = 117
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 219 PLDLRCLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQS 398
P ++ ++GF +FFSFLG FD ++ + L+ G T G + ++
Sbjct: 8 PQEIGIGLTGFGVFFSFLGIIFFFD---KGLLAMGNILFLSGLGLTIGL-KSTLQFFTKP 63
Query: 399 RNFLGTLA 422
+N+ GT++
Sbjct: 64 KNYKGTIS 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,019
Number of Sequences: 37544
Number of extensions: 317886
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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