Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d20
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   161   3e-40
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical p...    27   7.4  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  161 bits (391), Expect = 3e-40
 Identities = 86/156 (55%), Positives = 103/156 (66%)
 Frame = -2

Query: 563 LTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDG 384
           LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD 
Sbjct: 68  LTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDS 127

Query: 383 NVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPV 204
            +PR+LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP 
Sbjct: 128 VLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPA 183

Query: 203 VLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 96
            +                 +   A Y KLLA+  KE
Sbjct: 184 RIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 60  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSE 179
           P F ++    +G L+++C Q SIFS+  L + +  +L ++
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTD 109


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 349 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 224
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 96  FLLSLCKQFSIFSLRGLALSETLLL 170
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = +3

Query: 72  LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETVTSALQNYRGD*PLDLR 233
           L+L + LGF+   C     + LR   A +E L         ET ++   NY     +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487

Query: 234 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 350
           C +  +S +  + GW     +I T I+   ++  L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524


>Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = +3

Query: 72  LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETVTSALQNYRGD*PLDLR 233
           L+L + LGF+   C     + LR   A +E L         ET ++   NY     +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487

Query: 234 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 350
           C +  +S +  + GW     +I T I+   ++  L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 410 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 237
           Q  P + D N   R  PK   K  K+ +LS  E+D +  V     P+KE KE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 440  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 291
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = -3

Query: 553 AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 389
           A+  F C+   HVT  +      +E  +V++ + V+   I  S+  ++ + +   F    
Sbjct: 58  AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114

Query: 388 MEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSN 287
              Y +V  P +L K  SC  + K  +Y++  S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,700
Number of Sequences: 27780
Number of extensions: 258064
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)