Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d17
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   221   8e-59
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   217   7e-58
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    37   0.002
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   1.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   3.4  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   4.5  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.5  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   7.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.8  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.8  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  221 bits (539), Expect = 8e-59
 Identities = 111/188 (59%), Positives = 130/188 (69%)
 Frame = -2

Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
           ++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D AK   
Sbjct: 21  EEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGG 80

Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQ 209
           V  M                          ASE LIKQIPRLLGPGL+KAGKFP  +SH 
Sbjct: 81  VDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHS 140

Query: 208 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNV 29
           + +  KI EVK TIKFQ+KKVLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+
Sbjct: 141 DDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNI 200

Query: 28  RSLHMKSS 5
            SL +KS+
Sbjct: 201 GSLVIKST 208


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  217 bits (531), Expect = 7e-58
 Identities = 108/188 (57%), Positives = 130/188 (69%)
 Frame = -2

Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
           ++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D AK   
Sbjct: 21  EEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHGG 80

Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQ 209
           V  M                          ASE LIKQIPRLLGPGL+KAGKFP  +SH 
Sbjct: 81  VDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHA 140

Query: 208 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNV 29
           + +  KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+
Sbjct: 141 DDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNI 200

Query: 28  RSLHMKSS 5
            SL +KS+
Sbjct: 201 GSLVVKST 208


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = -2

Query: 292 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 125
           + +I  +PR+LG    +  K P  +       E + +++    G   F         +  
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203

Query: 124 GHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKSS 5
           GHV  T  ELA+NV   + F+   ++    + + S+H+K+S
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = -2

Query: 199  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 44
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 43   HW 38
            H+
Sbjct: 2742 HY 2743


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 99  SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 197
           S+G   ++ T T R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = -3

Query: 144 CVFL*QLAMWT*LLMSLPRMCIFPSTSLCHCSRNTGRMSD 25
           C FL    ++  + + +  +C+F  T++ +  +N  R+++
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 39  QCFLSSDTRKLMERCTFWASSSGVMSTWPTATERHNT 149
           +CF  SD +KL +RC    SS      WP   + ++T
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 179 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 286
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 251 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 141
           F + W I P+ SLP G H +E          PN+EG V
Sbjct: 36  FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 86   ILGKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 250
            +L K++    + ++C+++ +HL+H+ L      F N  L+   L+      F  FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 317 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLITML 418
           +G+F+ +LF LIQ  +   +  W +   + +T++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 80  SFHQLPCVTAQETLAEC 30
           ++HQL CV  Q+ L+EC
Sbjct: 63  TYHQLLCVLEQKHLSEC 79


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 295  SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 122
            S+ ++    R++G    K    F  +++   S    +DE++ +  K +  ++LC  VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792

Query: 121  HVD 113
            H+D
Sbjct: 1793 HID 1795


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 288 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 205
           H S RFP    PV T L NSL++  T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 403 PHHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 537
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,991
Number of Sequences: 5004
Number of extensions: 50305
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)