Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d17
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 214 4e-56
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 213 6e-56
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 211 3e-55
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 209 1e-54
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 51 6e-07
04_04_0401 - 24946801-24947562 44 1e-04
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 42 3e-04
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 1.5
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 3.4
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 3.4
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 3.4
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 6.0
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 27 8.0
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 8.0
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 214 bits (523), Expect = 4e-56
Identities = 104/188 (55%), Positives = 134/188 (71%)
Frame = -2
Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 21 KEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 80
Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQ 209
+ M ASE++IKQIPRLLGPG KFP L++HQ
Sbjct: 81 LDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPG-----KFPTLVTHQ 135
Query: 208 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNV 29
ES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNV
Sbjct: 136 ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNV 195
Query: 28 RSLHMKSS 5
R L++KS+
Sbjct: 196 RCLYIKST 203
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 213 bits (521), Expect = 6e-56
Identities = 104/188 (55%), Positives = 134/188 (71%)
Frame = -2
Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 39 KEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 98
Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQ 209
+ M ASE++IKQIPRLLGPG KFP L++HQ
Sbjct: 99 LDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPG-----KFPTLVTHQ 153
Query: 208 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNV 29
ES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNV
Sbjct: 154 ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNV 213
Query: 28 RSLHMKSS 5
R L++KS+
Sbjct: 214 RCLYIKST 221
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 211 bits (516), Expect = 3e-55
Identities = 102/188 (54%), Positives = 135/188 (71%)
Frame = -2
Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK++VC+LGD QH +EA+ +
Sbjct: 21 REKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKLKVCMLGDAQHVEEAEKMG 80
Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQ 209
+ M ASE++IKQIPRLLGPG KFP L++HQ
Sbjct: 81 LDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPG-----KFPTLVTHQ 135
Query: 208 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNV 29
ES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNV
Sbjct: 136 ESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNV 195
Query: 28 RSLHMKSS 5
R L++KS+
Sbjct: 196 RCLYLKST 203
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 209 bits (510), Expect = 1e-54
Identities = 108/210 (51%), Positives = 140/210 (66%), Gaps = 22/210 (10%)
Frame = -2
Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ +
Sbjct: 21 REKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKMG 80
Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKA---------- 239
+ M ASE++IKQIPRLLGPGLNKA
Sbjct: 81 LDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKILLVYGRS 140
Query: 238 ------------GKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDEL 95
GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++
Sbjct: 141 ILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQI 200
Query: 94 AQNVHLSINFLVSLLKKHWQNVRSLHMKSS 5
QNV +S+NFLVSLLKK+WQNVR L++KS+
Sbjct: 201 FQNVQMSVNFLVSLLKKNWQNVRCLYLKST 230
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = -2
Query: 289 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 113
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 112 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSSD 2
M ++ +NV ++ V + K W NVRSLH+K+ D
Sbjct: 205 MKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKAVD 241
>04_04_0401 - 24946801-24947562
Length = 253
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = -2
Query: 259 GPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 80
G KA + + ++ + E ++ +++ C +V VGH M +E +NV
Sbjct: 113 GKAAAKAARVVPVDLADQAWAESAREAARRVELRVEGGTCRAVRVGHAAMAREEAVENVV 172
Query: 79 LSINFLVSLLKKHWQNVRSLHMKSSD 2
++ + + + W+NVR+LH+K+ +
Sbjct: 173 AAVEAAAACVPRKWRNVRALHVKAPE 198
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 41.9 bits (94), Expect = 3e-04
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 2/171 (1%)
Frame = -2
Query: 565 DKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLN 389
+KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 282 EKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEARAAG 340
Query: 388 VPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGP-GLNKAGKFPGLLSH 212
+ L K + R+LGP GL K G +++
Sbjct: 341 ADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSK-VARILGPRGLMPNPKL-GSVTN 398
Query: 211 QESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV 59
S K + G + F++ K + V +G ++ + + L +N+ ++ L+
Sbjct: 399 DVSGAVKAAK-SGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFVHALL 448
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 97 LAQNVHLSINFLVSLLKKH 41
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 115 DMTPDELAQNVHLSINFLVSLLKKH 41
D + + VHLS+NF++ L++KH
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKH 286
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 148 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 255
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 475 QCRRNACPSVGHSSSDQFEALQSPKS 552
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 442 AFSAAVCILALQCRRNACPSVGH 510
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 79 DAHSGQAHQESCPHGQLLQKDTTPSSFGT*WFP*LHQSSASWTPGG---REDQGIYQLCS 249
D SG+ S L+ K T S + Q ++S + G + QG LC
Sbjct: 262 DGSSGENQLLSDLQASLMSKQRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQGFIDLCE 321
Query: 250 NRDPTNGESA 279
N D + GES+
Sbjct: 322 NTDTSEGESS 331
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 283 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 164
++ + +LG N K+ LL + + KIDE++ ++K
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,815
Number of Sequences: 37544
Number of extensions: 338188
Number of successful extensions: 932
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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