Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d17
         (569 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   9.3  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   9.3  
AY745208-1|AAU93475.1|  103|Anopheles gambiae cytochrome P450 pr...    23   9.3  

>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 183 KSREPLSSK*RRCC 142
           K REPL ++ R CC
Sbjct: 89  KPREPLCTRLRNCC 102


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 183 KSREPLSSK*RRCC 142
           K REPL ++ R CC
Sbjct: 89  KPREPLCTRLRNCC 102


>AY745208-1|AAU93475.1|  103|Anopheles gambiae cytochrome P450
          protein.
          Length = 103

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 77 FHQLPCVTAQETLAECPIIAYEIKR 3
          FH +P    + TLA+C +  Y + +
Sbjct: 10 FHIVPVSGPRRTLADCSLGGYRVPK 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,705
Number of Sequences: 2352
Number of extensions: 12192
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)