Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d17
         (569 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT014654-1|AAT27278.1|  217|Drosophila melanogaster RE06042p pro...   280   1e-75
AE014296-2043|AAF50002.2|  217|Drosophila melanogaster CG7283-PA...   280   1e-75
BT001825-1|AAN71580.1|  155|Drosophila melanogaster RH43519p pro...   202   3e-52
AY113239-1|AAM29244.1|  216|Drosophila melanogaster AT11516p pro...   189   3e-48
AE014297-1926|AAF55120.1|  216|Drosophila melanogaster CG3843-PA...   189   3e-48
BT001758-1|AAN71513.1|  150|Drosophila melanogaster RH06366p pro...   175   3e-44
AE014296-2045|AAN12245.1|  140|Drosophila melanogaster CG7283-PC...   175   3e-44
AE014296-2044|AAN12244.1|   57|Drosophila melanogaster CG7283-PB...    66   3e-11
AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p pro...    33   0.36 
AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-P...    33   0.36 
AY051627-1|AAK93051.1|  517|Drosophila melanogaster GH27756p pro...    29   3.3  
AE014298-2517|AAF48693.1|  517|Drosophila melanogaster CG4955-PA...    29   3.3  

>BT014654-1|AAT27278.1|  217|Drosophila melanogaster RE06042p
           protein.
          Length = 217

 Score =  280 bits (686), Expect = 1e-75
 Identities = 141/186 (75%), Positives = 148/186 (79%)
 Frame = -2

Query: 562 KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVP 383
           KKR FLETVELQIGLKNYDPQKDKRFSGTVKLK+IPRPKM+VC+LGDQQHCDEAK  NV 
Sbjct: 24  KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVD 83

Query: 382 CMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQES 203
            M                          ASESLIKQIPRLLGPGLNKAGKFP LLSHQES
Sbjct: 84  FMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQES 143

Query: 202 MTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRS 23
           M  KI+EVK TIKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRS
Sbjct: 144 MIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRS 203

Query: 22  LHMKSS 5
           LH+KSS
Sbjct: 204 LHVKSS 209


>AE014296-2043|AAF50002.2|  217|Drosophila melanogaster CG7283-PA,
           isoform A protein.
          Length = 217

 Score =  280 bits (686), Expect = 1e-75
 Identities = 141/186 (75%), Positives = 148/186 (79%)
 Frame = -2

Query: 562 KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVP 383
           KKR FLETVELQIGLKNYDPQKDKRFSGTVKLK+IPRPKM+VC+LGDQQHCDEAK  NV 
Sbjct: 24  KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVD 83

Query: 382 CMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQES 203
            M                          ASESLIKQIPRLLGPGLNKAGKFP LLSHQES
Sbjct: 84  FMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQES 143

Query: 202 MTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRS 23
           M  KI+EVK TIKFQMKKVLCLSVAVGHV M  DELAQNV+LSINFLVSLLKK+WQNVRS
Sbjct: 144 MIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRS 203

Query: 22  LHMKSS 5
           LH+KSS
Sbjct: 204 LHVKSS 209


>BT001825-1|AAN71580.1|  155|Drosophila melanogaster RH43519p
           protein.
          Length = 155

 Score =  202 bits (493), Expect = 3e-52
 Identities = 104/147 (70%), Positives = 110/147 (74%)
 Frame = -2

Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
           M+VC+LGDQQHCDEAK  NV  M                          ASESLIKQIPR
Sbjct: 1   MKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPR 60

Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
           LLGPGLNKAGKFP LLSHQESM  KI+EVK TIKFQMKKVLCLSVAVGHV M  DELAQN
Sbjct: 61  LLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQN 120

Query: 85  VHLSINFLVSLLKKHWQNVRSLHMKSS 5
           V+LSINFLVSLLKK+WQNVRSLH+KSS
Sbjct: 121 VNLSINFLVSLLKKNWQNVRSLHVKSS 147


>AY113239-1|AAM29244.1|  216|Drosophila melanogaster AT11516p
           protein.
          Length = 216

 Score =  189 bits (460), Expect = 3e-48
 Identities = 98/181 (54%), Positives = 123/181 (67%)
 Frame = -2

Query: 547 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXX 368
           LETVELQIGL++YDP K KRF G+V L ++  P+++VCV GDQ+HC +AK + V C+   
Sbjct: 29  LETVELQIGLRDYDPDKCKRFHGSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVE 88

Query: 367 XXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKI 188
                                  ASES+IKQIPRLLGPGL  AGKF   L+  ESM+ KI
Sbjct: 89  ALKKLNKDPKLTKKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKI 148

Query: 187 DEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 8
            ++  T K  MK++ CLSV VGHV M P+ELA+N+ +SINFLVSLLK +WQNVRSLH+KS
Sbjct: 149 -KILSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNVRSLHIKS 207

Query: 7   S 5
           S
Sbjct: 208 S 208


>AE014297-1926|AAF55120.1|  216|Drosophila melanogaster CG3843-PA
           protein.
          Length = 216

 Score =  189 bits (460), Expect = 3e-48
 Identities = 98/181 (54%), Positives = 123/181 (67%)
 Frame = -2

Query: 547 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXX 368
           LETVELQIGL++YDP K KRF G+V L ++  P+++VCV GDQ+HC +AK + V C+   
Sbjct: 29  LETVELQIGLRDYDPDKCKRFHGSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVE 88

Query: 367 XXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKI 188
                                  ASES+IKQIPRLLGPGL  AGKF   L+  ESM+ KI
Sbjct: 89  ALKKLNKDPKLTKKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKI 148

Query: 187 DEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 8
            ++  T K  MK++ CLSV VGHV M P+ELA+N+ +SINFLVSLLK +WQNVRSLH+KS
Sbjct: 149 -KILSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNVRSLHIKS 207

Query: 7   S 5
           S
Sbjct: 208 S 208


>BT001758-1|AAN71513.1|  150|Drosophila melanogaster RH06366p
           protein.
          Length = 150

 Score =  175 bits (426), Expect = 3e-44
 Identities = 86/97 (88%), Positives = 90/97 (92%)
 Frame = -2

Query: 295 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 116
           SESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK TIKFQMKKVLCLSVAVGHV
Sbjct: 46  SESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHV 105

Query: 115 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSS 5
            M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KSS
Sbjct: 106 GMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSS 142


>AE014296-2045|AAN12245.1|  140|Drosophila melanogaster CG7283-PC,
           isoform C protein.
          Length = 140

 Score =  175 bits (426), Expect = 3e-44
 Identities = 86/97 (88%), Positives = 90/97 (92%)
 Frame = -2

Query: 295 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 116
           SESLIKQIPRLLGPGLNKAGKFP LLSHQESM  KI+EVK TIKFQMKKVLCLSVAVGHV
Sbjct: 36  SESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHV 95

Query: 115 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSS 5
            M  DELAQNV+LSINFLVSLLKK+WQNVRSLH+KSS
Sbjct: 96  GMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSS 132


>AE014296-2044|AAN12244.1|   57|Drosophila melanogaster CG7283-PB,
           isoform B protein.
          Length = 57

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -2

Query: 562 KKRNFLETVELQIGLKNYDPQKDKRFSGTVK 470
           KKR FLETVELQIGLKNYDPQKDKRFSGTVK
Sbjct: 24  KKRGFLETVELQIGLKNYDPQKDKRFSGTVK 54


>AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p
           protein.
          Length = 681

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -2

Query: 160 QMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 11
           Q+ K   ++V VG+ ++T ++LA+N+ L I  L  +      N+RS+++K
Sbjct: 450 QLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLK 499


>AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-PA
           protein.
          Length = 681

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -2

Query: 160 QMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 11
           Q+ K   ++V VG+ ++T ++LA+N+ L I  L  +      N+RS+++K
Sbjct: 450 QLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLK 499


>AY051627-1|AAK93051.1|  517|Drosophila melanogaster GH27756p
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 302 ESIKFFGQFLDKLFVLIQFFQSLSIHTWHIQGFSLITMLLVSKNAN 439
           E + FF  FL ++  ++ FF   +I  W   G+ ++ +L+  KNA+
Sbjct: 339 EQLNFFITFLLEVLGVLVFFAICTITFWITLGYHVVQLLVDLKNAD 384


>AE014298-2517|AAF48693.1|  517|Drosophila melanogaster CG4955-PA
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 302 ESIKFFGQFLDKLFVLIQFFQSLSIHTWHIQGFSLITMLLVSKNAN 439
           E + FF  FL ++  ++ FF   +I  W   G+ ++ +L+  KNA+
Sbjct: 339 EQLNFFITFLLEVLGVLVFFAICTITFWITLGYHVVQLLVDLKNAD 384


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,769,170
Number of Sequences: 53049
Number of extensions: 575488
Number of successful extensions: 1436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)