Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d17
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 241 2e-64
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 219 1e-57
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 173 6e-44
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 38 0.004
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 30 1.0
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.0
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.0
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.4
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 7.2
Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 241 bits (591), Expect = 2e-64
Identities = 115/187 (61%), Positives = 139/187 (74%)
Frame = -2
Query: 565 DKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNV 386
+K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++
Sbjct: 22 EKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDI 81
Query: 385 PCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQE 206
P M ASESLIKQIPR+LGPGLNKAGKFP +++H E
Sbjct: 82 PSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGE 141
Query: 205 SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVR 26
S+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVR
Sbjct: 142 SLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVR 201
Query: 25 SLHMKSS 5
SL++KS+
Sbjct: 202 SLNIKST 208
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 219 bits (535), Expect = 1e-57
Identities = 104/171 (60%), Positives = 126/171 (73%)
Frame = -2
Query: 517 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 338
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 337 XXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 158
ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 157 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSS 5
MKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KS+
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKST 178
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 173 bits (422), Expect = 6e-44
Identities = 85/147 (57%), Positives = 103/147 (70%)
Frame = -2
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M+VCV GDQ H DEA ++P M ASESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSS 5
+ LSINFLVSLLKK+WQNVRSL++KS+
Sbjct: 121 ISLSINFLVSLLKKNWQNVRSLNIKST 147
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = -2
Query: 274 IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 98
+ LG +A K P +Q+ ++ I+ T+ + +++ + S V VGH+ + +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376
Query: 97 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSSD 2
L +N+ + + S + N+RS+++ +SD
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASD 408
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 131 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 274
+R + HLEL GS L+FI LL L +K R+ T F G GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 253 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 74
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 73 INFLVSLLKKH-WQNVRSL 20
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 253 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 74
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 73 INFLVSLLKKH-WQNVRSL 20
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 253 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 74
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 73 INFLVSLLKKH-WQNVRSL 20
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 568 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 458
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 283 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 164
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
>Z83246-1|CAB05842.2| 312|Caenorhabditis elegans Hypothetical
protein ZK795.1 protein.
Length = 312
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 538 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 413
++L++G YDP ++KY P+ KM + +LG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,729,820
Number of Sequences: 27780
Number of extensions: 299301
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -