Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d16
         (522 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55E46 Cluster: PREDICTED: similar to CG12267-PA...    88   1e-16
UniRef50_Q171Y0 Cluster: DNA-directed RNA polymerase III, 62-kS-...    86   4e-16
UniRef50_Q9VG60 Cluster: CG12267-PA; n=2; Sophophora|Rep: CG1226...    74   2e-12
UniRef50_UPI0000519E92 Cluster: PREDICTED: similar to CG12267-PA...    71   2e-11
UniRef50_UPI00015B6229 Cluster: PREDICTED: similar to DNA-direct...    68   1e-10
UniRef50_Q9BUI4 Cluster: DNA-directed RNA polymerase III subunit...    62   7e-09
UniRef50_UPI00005A2599 Cluster: PREDICTED: similar to polymerase...    44   0.002
UniRef50_Q7RPL1 Cluster: Cation-transporting ATPase; n=4; Plasmo...    33   5.2  
UniRef50_UPI0000E21769 Cluster: PREDICTED: hypothetical protein;...    32   9.2  
UniRef50_A0DQH1 Cluster: Chromosome undetermined scaffold_6, who...    32   9.2  

>UniRef50_UPI0000D55E46 Cluster: PREDICTED: similar to CG12267-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG12267-PA - Tribolium castaneum
          Length = 494

 Score = 87.8 bits (208), Expect = 1e-16
 Identities = 41/127 (32%), Positives = 72/127 (56%)
 Frame = -3

Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
           +Q ++K+ S  G NK+  LF+ NL  +     ++CYK L N+              +DK+
Sbjct: 353 VQDLKKSTS-NGPNKSFTLFYTNLDQIVRMTLELCYKTLFNIMTRKNHERLVHKRIIDKK 411

Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
           +RV +I+ GMR +    + + D+EE +TP E  +LQ ++  +K+L+  ELE+D+ +F+L+
Sbjct: 412 QRVDTIIMGMRAQGAADEQLSDIEEMITPPEREILQKIDVIMKKLNTVELEVDETIFLLQ 471

Query: 160 WYFMYTH 140
               Y H
Sbjct: 472 ISLYYRH 478


>UniRef50_Q171Y0 Cluster: DNA-directed RNA polymerase III,
           62-kS-subunit, putative; n=2; Culicidae|Rep:
           DNA-directed RNA polymerase III, 62-kS-subunit, putative
           - Aedes aegypti (Yellowfever mosquito)
          Length = 507

 Score = 86.2 bits (204), Expect = 4e-16
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
 Frame = -3

Query: 520 LQPMRKTASAG-GMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDK 344
           +Q  RKT     G  K+ +LF++N   +   + ++CYKAL N               ++K
Sbjct: 379 IQTFRKTGGGNAGAPKSFFLFYVNQAQIVSMLLEICYKALYNSITRSTHDKTVNKRLIEK 438

Query: 343 QRRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFIL 164
            +R+ SIV  M+ R E ++ I +++ETLTP E  +LQ V+ R+K L +AE+ ID+ +F+L
Sbjct: 439 SQRLDSIVEAMKDRGESEEYIAEIQETLTPPEKEILQKVKIRVKSLYSAEIGIDETIFLL 498

Query: 163 KWYFMY 146
           K Y  Y
Sbjct: 499 KLYQQY 504


>UniRef50_Q9VG60 Cluster: CG12267-PA; n=2; Sophophora|Rep:
           CG12267-PA - Drosophila melanogaster (Fruit fly)
          Length = 522

 Score = 74.1 bits (174), Expect = 2e-12
 Identities = 39/113 (34%), Positives = 58/113 (51%)
 Frame = -3

Query: 493 AGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQRRVRSIVHG 314
           + G  KA YLF +   D    + D  YK+L N               ++K +R+ SIV  
Sbjct: 395 SNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDSIVEA 454

Query: 313 MRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWY 155
           M+ R E  + I ++ ET TP E  +L  V+ R+K LS AEL +D  +F+L+ Y
Sbjct: 455 MKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDTIFLLQMY 507


>UniRef50_UPI0000519E92 Cluster: PREDICTED: similar to CG12267-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG12267-PA - Apis mellifera
          Length = 432

 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 36/136 (26%), Positives = 69/136 (50%)
 Frame = -3

Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
           +Q ++K+  +    K  +LFHI+L+ V     + CY AL N+              +DKQ
Sbjct: 287 MQEIKKSGVSAAPIKTFFLFHIDLNLVVRMEIEHCYHALYNIMQRREYEVNSNKRMIDKQ 346

Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
            R++++   ++    P++ + ++ E +TP+E   L+ V+  +K+L   EL+ID  LF+L 
Sbjct: 347 LRMQTLTSNLKEHGAPEEQLAEIAEMMTPTEKQQLEKVQNTIKKLGITELQIDDTLFLLT 406

Query: 160 WYFMYTH*MLFYTKKN 113
               ++   + Y   N
Sbjct: 407 IVMNHSQLKVLYGSVN 422


>UniRef50_UPI00015B6229 Cluster: PREDICTED: similar to DNA-directed
           RNA polymerase III, 62-kS-subunit, putative; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to
           DNA-directed RNA polymerase III, 62-kS-subunit, putative
           - Nasonia vitripennis
          Length = 498

 Score = 68.1 bits (159), Expect = 1e-10
 Identities = 33/125 (26%), Positives = 62/125 (49%)
 Frame = -3

Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
           +  ++K   +    K  +LFHI+L+ V     + CY AL NV              +DK+
Sbjct: 372 IHELKKAGVSTAPTKIFFLFHIDLNQVVRMTIEHCYHALYNVIQRREHEMTSNKRIIDKE 431

Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
            R++++   ++     ++ + ++ E +TPSE   ++ V + +K+L   E  ID  LF+L+
Sbjct: 432 LRIKTLTANLKEHGATEEQLAEIAEMMTPSERLQIERVHEVIKKLGTNEFCIDDTLFVLQ 491

Query: 160 WYFMY 146
            Y  Y
Sbjct: 492 MYIRY 496


>UniRef50_Q9BUI4 Cluster: DNA-directed RNA polymerase III subunit
           RPC3; n=26; Euteleostomi|Rep: DNA-directed RNA
           polymerase III subunit RPC3 - Homo sapiens (Human)
          Length = 534

 Score = 62.1 bits (144), Expect = 7e-09
 Identities = 31/126 (24%), Positives = 65/126 (51%)
 Frame = -3

Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
           LQ + KT      ++  YL+ +N+   A  +   CYK++ N+              L+K 
Sbjct: 406 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKS 464

Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
           +RV +I+  M+     +  + ++EE +T  E   L+ +++ + +L A+E+++D+ +F+L+
Sbjct: 465 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLE 524

Query: 160 WYFMYT 143
            Y   T
Sbjct: 525 SYIECT 530


>UniRef50_UPI00005A2599 Cluster: PREDICTED: similar to polymerase
           (RNA) III (DNA directed) polypeptide C (62kD); n=1;
           Canis lupus familiaris|Rep: PREDICTED: similar to
           polymerase (RNA) III (DNA directed) polypeptide C (62kD)
           - Canis familiaris
          Length = 226

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 18/68 (26%), Positives = 40/68 (58%)
 Frame = -3

Query: 346 KQRRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFI 167
           K +RV +I+  M+        + ++EE +T  E   L+ +++ + +L A+E+++D+ +F+
Sbjct: 155 KSQRVEAIIASMQATGAEDAQLQEIEEMITVPERQQLETLKRNVNKLDASEIQVDETIFL 214

Query: 166 LKWYFMYT 143
           L+ Y   T
Sbjct: 215 LESYIEST 222


>UniRef50_Q7RPL1 Cluster: Cation-transporting ATPase; n=4; Plasmodium
            (Vinckeia)|Rep: Cation-transporting ATPase - Plasmodium
            yoelii yoelii
          Length = 1682

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +2

Query: 14   LNSLEIRNTFFVCLQSRILNN*SIKRSLA---LDKNVFFC 124
            LNSL I+    +CL + IL+N  I ++L    ++KN++FC
Sbjct: 1035 LNSLSIKGYRVICLAANILDNKIINKNLRREDVEKNLYFC 1074


>UniRef50_UPI0000E21769 Cluster: PREDICTED: hypothetical protein;
           n=2; Catarrhini|Rep: PREDICTED: hypothetical protein -
           Pan troglodytes
          Length = 223

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 349 PTAARGPPARGTRVATRCPEPCSTCPALCVPR 444
           P A   PPAR    AT C  P + CPA   PR
Sbjct: 24  PAAPPYPPARSLPKATTCTAPLTICPAGRAPR 55


>UniRef50_A0DQH1 Cluster: Chromosome undetermined scaffold_6, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_6,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1075

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 322 VHGMRLRAEPQQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLFILK 161
           + GM+ + +  +N+DD+++ +   E  LA +Q +E  ++ L     E++K L + K
Sbjct: 749 IEGMKYKLDKMENVDDLKKRIQELEGQLAEMQALELEIESLKDRIAELEKELKLWK 804


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,262,514
Number of Sequences: 1657284
Number of extensions: 6757248
Number of successful extensions: 19936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19924
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)