Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d16
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.7  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    26   3.0  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 456  LIYTTWHTQCRTCATRLWATCC 391
            +++  +++QC    T  WA+CC
Sbjct: 1049 ILFRIFNSQCSKLGTNAWASCC 1070


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 477 RPSICSILIYTTWHTQCRTCATRLWATCCDARPTSGR 367
           RP    IL+YT    +C+ C +     C   R T GR
Sbjct: 86  RPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGR 122


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 367 PPARGTRVATRCPEPCSTCPALCVP 441
           P  R T++AT+ P P +T     VP
Sbjct: 368 PNVRATQIATQVPNPQNTPTTTAVP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,847
Number of Sequences: 5004
Number of extensions: 27181
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)