Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d16
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    31   0.74 
03_04_0070 + 17042509-17043129                                         29   2.3  
01_07_0082 - 40965947-40967023                                         28   5.2  
04_01_0342 - 4457825-4460863                                           27   6.9  
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273...    27   9.1  

>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
            25575208-25575555,25576540-25576633
          Length = 1588

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 349  DKQRRV--RSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAE 194
            D QR V  +SIV  +R  AE    +DDV   +  +E AV Q ++   K L  AE
Sbjct: 1418 DAQRLVDLQSIVGELRASAEAAPELDDVTAQMVDAESAVAQLIDTNGKLLRKAE 1471


>03_04_0070 + 17042509-17043129
          Length = 206

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 443 RGTHSA--GHVLQGSGQRVATRVPRAGGPRAAVG 348
           RG +++  GH L G  Q V   VPR GG  AA G
Sbjct: 35  RGAYNSPNGHRLSGGSQAVRMSVPRTGGNFAAWG 68


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 349 PTAARGPPARGTRVATRCPEPCSTCPALCVPRRVD*YGTNRRP 477
           P  A  PPA G+    +  EP +  PA   P     YGT   P
Sbjct: 216 PPPAGYPPATGSSKPAKAGEPVTAYPAAAGPSTAAPYGTAPPP 258


>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 95  LALDKNV-FFCIKQ-HSMRIHKVPLQYK*IFIDF*FSGAELFESFLDALQYC*FGRGQRF 268
           L  DK + ++C+K+ H  R HK+   +   +I + F   E F +    +  C + RG+ F
Sbjct: 787 LTEDKEITWYCLKRCHIERCHKLNTVFSTDYIKYRFQTLEAFSAAELMMANCIWSRGRTF 846


>02_05_1265 -
           35326506-35326773,35326944-35327109,35327194-35327351,
           35327779-35327966,35328046-35328156,35328311-35328476,
           35328718-35328885,35329374-35330623
          Length = 824

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 518 TANEENRVGRRHEQGRLFVPY*STRRGTHSAGHV 417
           T + E R G RH QG+   P  +T  G +S G++
Sbjct: 88  TYDGEWRRGMRHGQGKTMWPSGATYEGEYSGGYI 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,084,935
Number of Sequences: 37544
Number of extensions: 191116
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)