Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d16
         (522 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           27   0.38 
AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B...    23   4.7  
AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B...    23   4.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   6.2  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   8.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   8.2  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 467 IDGLVHAAGRRGFPH 511
           +DG +  AGR+GFPH
Sbjct: 77  LDGRLQVAGRKGFPH 91


>AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B
           precursor protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 416 LQGSGQRVATRVPRAGGPRAAVGQAA 339
           LQ  G+R    +  AGGP   VG +A
Sbjct: 331 LQRLGERARDALVAAGGPEYEVGNSA 356


>AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B
           protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 416 LQGSGQRVATRVPRAGGPRAAVGQAA 339
           LQ  G+R    +  AGGP   VG +A
Sbjct: 331 LQRLGERARDALVAAGGPEYEVGNSA 356


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 352 TAARGPPARGTRVATRCPEPCST 420
           T   GPP  G+   +RC +P  T
Sbjct: 763 TGGGGPPPDGSGSGSRCSKPSVT 785


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 310 RLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKN 176
           ++  + +QN  +V   +T  EL+V + + + ++  SAA+L  D +
Sbjct: 350 QINLKVKQNAINVILAVTAEELSVYEQLSRLVEGSSAAKLSNDSS 394


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
          subunit AgBnu protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 86 LSINYLRYDSVNKQKKCFVFLNC*DC 9
          LS+ + +   V  Q KCF   NC +C
Sbjct: 17 LSLAFGQSSRVVTQSKCFFQKNCIEC 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,428
Number of Sequences: 2352
Number of extensions: 7527
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)