Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d16
(522 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (D... 62 1e-09
AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subu... 62 1e-09
AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (D... 62 1e-09
U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subuni... 62 2e-09
AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subu... 60 3e-09
BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif prote... 30 5.7
AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein. 30 5.7
AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein. 30 5.7
AL390039-1|CAI41563.1| 202|Homo sapiens novel protein protein. 30 5.7
AK023732-1|BAB14660.1| 311|Homo sapiens protein ( Homo sapiens ... 30 5.7
AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens ... 30 5.7
>BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) protein.
Length = 534
Score = 62.1 bits (144), Expect = 1e-09
Identities = 31/126 (24%), Positives = 65/126 (51%)
Frame = -3
Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
LQ + KT ++ YL+ +N+ A + CYK++ N+ L+K
Sbjct: 406 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKS 464
Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
+RV +I+ M+ + + ++EE +T E L+ +++ + +L A+E+++D+ +F+L+
Sbjct: 465 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLE 524
Query: 160 WYFMYT 143
Y T
Sbjct: 525 SYIECT 530
>AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subunit
RPC62 protein.
Length = 534
Score = 62.1 bits (144), Expect = 1e-09
Identities = 31/126 (24%), Positives = 65/126 (51%)
Frame = -3
Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
LQ + KT ++ YL+ +N+ A + CYK++ N+ L+K
Sbjct: 406 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKS 464
Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
+RV +I+ M+ + + ++EE +T E L+ +++ + +L A+E+++D+ +F+L+
Sbjct: 465 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLE 524
Query: 160 WYFMYT 143
Y T
Sbjct: 525 SYIECT 530
>AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) variant protein.
Length = 534
Score = 62.1 bits (144), Expect = 1e-09
Identities = 31/126 (24%), Positives = 65/126 (51%)
Frame = -3
Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
LQ + KT ++ YL+ +N+ A + CYK++ N+ L+K
Sbjct: 406 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKS 464
Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
+RV +I+ M+ + + ++EE +T E L+ +++ + +L A+E+++D+ +F+L+
Sbjct: 465 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLE 524
Query: 160 WYFMYT 143
Y T
Sbjct: 525 SYIECT 530
>U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subunit
protein.
Length = 533
Score = 61.7 bits (143), Expect = 2e-09
Identities = 31/126 (24%), Positives = 65/126 (51%)
Frame = -3
Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
LQ + KT ++ YL+ +N+ A + D CYK++ N+ L+K
Sbjct: 405 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLFDRCYKSIANLIERRQFETKENKRLLEKS 463
Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
+RV +I+ M+ + + ++EE +T E L+ +++ + +L A+E+++ + +F+L+
Sbjct: 464 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVXETIFLLE 523
Query: 160 WYFMYT 143
Y T
Sbjct: 524 SYIECT 529
>AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subunit
protein.
Length = 534
Score = 60.5 bits (140), Expect = 3e-09
Identities = 30/126 (23%), Positives = 65/126 (51%)
Frame = -3
Query: 520 LQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQ 341
LQ + KT ++ YL+ +N+ A + CYK++ N+ L+K
Sbjct: 406 LQEIPKTPDHAP-SRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKS 464
Query: 340 RRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILK 161
+RV +I+ M+ + + ++EE +T E L+ +++ + +L A+E+++++ +F+L+
Sbjct: 465 QRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVEETIFLLE 524
Query: 160 WYFMYT 143
Y T
Sbjct: 525 SYIECT 530
>BC006986-1|AAH06986.1| 413|Homo sapiens RNA binding motif protein
41 protein.
Length = 413
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 109 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 159
>AL390039-3|CAI41564.1| 413|Homo sapiens novel protein protein.
Length = 413
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 109 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 159
>AL390039-2|CAC19636.1| 405|Homo sapiens novel protein protein.
Length = 405
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 109 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 159
>AL390039-1|CAI41563.1| 202|Homo sapiens novel protein protein.
Length = 202
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 106 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 156
>AK023732-1|BAB14660.1| 311|Homo sapiens protein ( Homo sapiens
cDNA FLJ13670 fis, clone PLACE1011725. ).
Length = 311
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 109 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 159
>AK001878-1|BAA91957.1| 405|Homo sapiens protein ( Homo sapiens
cDNA FLJ11016 fis, clone PLACE1003334. ).
Length = 405
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = -3
Query: 310 RLRAEP---QQNIDDVEETLTPSE--LAVLQGVEKRLKQLSAAELEIDKNLF 170
+LRA P Q + D+EE ++ + L + Q K KQL+ E+EI+K+LF
Sbjct: 109 KLRATPEAIQNRLQDIEERISERQRILCLPQRFAKS-KQLTRREMEIEKSLF 159
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,552,029
Number of Sequences: 237096
Number of extensions: 968580
Number of successful extensions: 2495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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