Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d16
(522 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051718-1|AAK93142.1| 522|Drosophila melanogaster LD24919p pro... 74 1e-13
AE014297-1537|AAF54828.2| 522|Drosophila melanogaster CG12267-P... 74 1e-13
X53959-1|CAA37910.1| 1480|Drosophila melanogaster slit protein p... 30 1.7
AE013599-2125|AAF58098.1| 1480|Drosophila melanogaster CG8355-PA... 30 1.7
AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB... 30 1.7
AF126540-1|AAD26567.1| 1504|Drosophila melanogaster slit protein... 29 3.8
AE013599-2126|AAF58097.1| 1504|Drosophila melanogaster CG8355-PC... 29 3.8
AY089224-1|AAL89962.1| 1117|Drosophila melanogaster AT01932p pro... 28 8.8
AE014298-1084|AAF46292.2| 1117|Drosophila melanogaster CG1514-PA... 28 8.8
AE014297-117|ABI31136.1| 100|Drosophila melanogaster CG41516-PA... 28 8.8
>AY051718-1|AAK93142.1| 522|Drosophila melanogaster LD24919p
protein.
Length = 522
Score = 74.1 bits (174), Expect = 1e-13
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = -3
Query: 493 AGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQRRVRSIVHG 314
+ G KA YLF + D + D YK+L N ++K +R+ SIV
Sbjct: 395 SNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDSIVEA 454
Query: 313 MRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWY 155
M+ R E + I ++ ET TP E +L V+ R+K LS AEL +D +F+L+ Y
Sbjct: 455 MKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDTIFLLQMY 507
>AE014297-1537|AAF54828.2| 522|Drosophila melanogaster CG12267-PA
protein.
Length = 522
Score = 74.1 bits (174), Expect = 1e-13
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = -3
Query: 493 AGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVXXXXXXXXXXXXXXLDKQRRVRSIVHG 314
+ G KA YLF + D + D YK+L N ++K +R+ SIV
Sbjct: 395 SNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDSIVEA 454
Query: 313 MRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWY 155
M+ R E + I ++ ET TP E +L V+ R+K LS AEL +D +F+L+ Y
Sbjct: 455 MKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDTIFLLQMY 507
>X53959-1|CAA37910.1| 1480|Drosophila melanogaster slit protein
protein.
Length = 1480
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 SLNSLEIRNTFFVCLQSRILNN*SIKRSLALDKNVFFCIKQHSMR 145
SL L+I N + R+ RSL LD N C+ +H+ +
Sbjct: 149 SLERLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFK 193
>AE013599-2125|AAF58098.1| 1480|Drosophila melanogaster CG8355-PA,
isoform A protein.
Length = 1480
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 SLNSLEIRNTFFVCLQSRILNN*SIKRSLALDKNVFFCIKQHSMR 145
SL L+I N + R+ RSL LD N C+ +H+ +
Sbjct: 149 SLERLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFK 193
>AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB,
isoform B protein.
Length = 1469
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 SLNSLEIRNTFFVCLQSRILNN*SIKRSLALDKNVFFCIKQHSMR 145
SL L+I N + R+ RSL LD N C+ +H+ +
Sbjct: 149 SLERLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFK 193
>AF126540-1|AAD26567.1| 1504|Drosophila melanogaster slit protein
protein.
Length = 1504
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 SLNSLEIRNTFFVCLQSRILNN*SIKRSLALDKNVFFCIKQHSMR 145
SL L+I N + R+ RSL LD N C+ +H+ +
Sbjct: 173 SLLRLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFK 217
>AE013599-2126|AAF58097.1| 1504|Drosophila melanogaster CG8355-PC,
isoform C protein.
Length = 1504
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 SLNSLEIRNTFFVCLQSRILNN*SIKRSLALDKNVFFCIKQHSMR 145
SL L+I N + R+ RSL LD N C+ +H+ +
Sbjct: 173 SLLRLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFK 217
>AY089224-1|AAL89962.1| 1117|Drosophila melanogaster AT01932p
protein.
Length = 1117
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 280 DDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWYFMYT 143
D + +L+ SEL +++ ++QL+ A+ E +KNL W Y+
Sbjct: 367 DHEDHSLSKSELTAAVRLKRYVRQLTMAKGECEKNLAKFGWNGNYS 412
>AE014298-1084|AAF46292.2| 1117|Drosophila melanogaster CG1514-PA
protein.
Length = 1117
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 280 DDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWYFMYT 143
D + +L+ SEL +++ ++QL+ A+ E +KNL W Y+
Sbjct: 367 DHEDHSLSKSELTAAVRLKRYVRQLTMAKGECEKNLAKFGWNGNYS 412
>AE014297-117|ABI31136.1| 100|Drosophila melanogaster CG41516-PA
protein.
Length = 100
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 370 PARGTRVATRCPEPCSTCP 426
P G +V TRCPE C + P
Sbjct: 2 PCTGIKVFTRCPEMCDSFP 20
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,014
Number of Sequences: 53049
Number of extensions: 320711
Number of successful extensions: 867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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