Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d16
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   4.7  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   4.7  
AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical...    28   4.7  
AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -3

Query: 331 RSIVHGMRLRAEPQQNIDDVEETLT------PSELAVLQGVEKRLKQLSAAELEIDK 179
           R +V+GMRLR E +QN D +  +         +E+   Q +  R+ QL     EI K
Sbjct: 588 RLLVNGMRLREEVEQNGDGMSPSKRTRRNSFKNEIPPFQSMNSRIVQLEVTGDEIPK 644


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 464 VPY*STRRGTHSAGHVLQGSGQRVATRVPRAGG 366
           VP+ S  RG+H A   +Q + QR+   VP   G
Sbjct: 181 VPHPSPVRGSHPAAQQVQNAPQRIPQHVPMPQG 213


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 464 VPY*STRRGTHSAGHVLQGSGQRVATRVPRAGG 366
           VP+ S  RG+H A   +Q + QR+   VP   G
Sbjct: 181 VPHPSPVRGSHPAAQQVQNAPQRIPQHVPMPQG 213


>AL032657-10|CAA21741.2|  343|Caenorhabditis elegans Hypothetical
           protein Y47H9C.10 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 295 PQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFI 167
           P   +  V E L P+E  V++ V K+L+ L      + KN+++
Sbjct: 37  PDTVVHTVLEKLLPAERMVVRNVSKKLRNLFDERYRVIKNVYM 79


>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 474 PSICSILIYTTWHTQCRTCATRLWATCCD-ARPTS 373
           P ICS L+ T +      CA RL  +  +  RPT+
Sbjct: 464 PPICSSLVLTNFDNMSEDCAPRLMRSASETCRPTT 498


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 474 PSICSILIYTTWHTQCRTCATRLWATCCD-ARPTS 373
           P ICS L+ T +      CA RL  +  +  RPT+
Sbjct: 474 PPICSSLVLTNFDNMSEDCAPRLMRSASETCRPTT 508


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 298 EPQQNIDDVEETLTPSELAVLQGVEKRLKQL 206
           E +++ +D EE +   E  +LQGVE+R + +
Sbjct: 79  EMEESRNDTEEVMKMKEAELLQGVERRRRNV 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,294
Number of Sequences: 27780
Number of extensions: 166988
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)