Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d15
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 135 2e-32
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 89 3e-18
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 85 4e-17
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 83 1e-16
10_08_0620 - 19321612-19323237 83 2e-16
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 82 3e-16
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 75 4e-14
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 69 3e-12
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 66 3e-11
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 64 1e-10
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 57 9e-09
11_06_0178 + 20942757-20942801,20943790-20943867,20943930-209440... 38 0.006
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 36 0.018
04_04_1141 + 31180906-31181249,31181719-31181862,31181971-311820... 29 2.0
01_05_0793 + 25278846-25279504,25279598-25279702,25280949-252810... 29 2.0
09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367... 28 4.7
04_03_0913 + 20777859-20780309 28 6.2
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 135 bits (327), Expect = 2e-32
Identities = 67/143 (46%), Positives = 92/143 (64%)
Frame = -2
Query: 574 IARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANAT 395
+ RD R +PGA ATEIELA++L EF+ GL+QYA+ KFA + E +PR LA+N+G +A
Sbjct: 400 MCRDSRIIPGAAATEIELARRLKEFSLKETGLDQYAIAKFAESFEMVPRTLAENAGLSAM 459
Query: 394 EVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKV 215
E+++ +Y H G G ID E G D I D Y+ K + +KY+ AA T+L+V
Sbjct: 460 EIISSLYAEHAGGNTKVG--IDLEEGGCKDVSIMKIWDLYVTKLFALKYSADAACTVLRV 517
Query: 214 DQIIMAKRAGGPKPRAPAGSDDE 146
DQIIMAK AGGP+ A G D++
Sbjct: 518 DQIIMAKPAGGPRRDAQPGMDED 540
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/138 (34%), Positives = 77/138 (55%)
Frame = -2
Query: 568 RDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEV 389
++ VPG GA ++E+++ L + A T+ G Q+ V FA ALE IPR L DN+G +AT+V
Sbjct: 404 KNSTVVPGGGAIDMEISKYLRQHARTIAGKSQFFVNSFAKALEVIPRQLCDNAGFDATDV 463
Query: 388 VNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQ 209
+NK+ + H G+ A F +D G+ D+ + + ++K I A AA IL VD+
Sbjct: 464 LNKLRQKHASGE-GANFGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 522
Query: 208 IIMAKRAGGPKPRAPAGS 155
+ ++ + A A +
Sbjct: 523 TVKNPKSESAQGDAAASA 540
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 85.0 bits (201), Expect = 4e-17
Identities = 41/120 (34%), Positives = 67/120 (55%)
Frame = -2
Query: 553 VPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVVNKIY 374
+ G GA EIE++ QL +A L G+E Y +++FA ALE IP LA+N+G N +V ++
Sbjct: 433 IAGGGAPEIEMSMQLAAWAKELQGMESYCIKEFAEALEVIPYTLAENAGLNPISIVTELR 492
Query: 373 KAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMAK 194
H +G+KNAG ++ + + E+ ++ L+ I A ILK+D I+ +
Sbjct: 493 NRHAKGEKNAGINV--RKGQITNILEENVVQPLLVSTSAITLACECVRMILKIDDIVTVR 550
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 83.4 bits (197), Expect = 1e-16
Identities = 46/140 (32%), Positives = 77/140 (55%)
Frame = -2
Query: 574 IARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANAT 395
I ++ + +PG GATE+ ++ L + + ++ G+E++ A+A E+IPR L N G N
Sbjct: 403 IWKNPKLLPGGGATELTVSATLKQKSSSVEGVEKWPYEAAALAFEAIPRTLLQNCGLNVI 462
Query: 394 EVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKV 215
+ ++ H G+ NA ID + + D KE+ I DSY +K K A+ AA +L++
Sbjct: 463 RTMTQLQGKHANGE-NAWVGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRI 521
Query: 214 DQIIMAKRAGGPKPRAPAGS 155
D I+ +G K +AP S
Sbjct: 522 DDIV----SGIKKKQAPGAS 537
>10_08_0620 - 19321612-19323237
Length = 541
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/120 (34%), Positives = 66/120 (55%)
Frame = -2
Query: 553 VPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVVNKIY 374
+ G GA EIE++ QL +A L G+E Y VR+FA ALE IP LA+N+G + V ++
Sbjct: 424 IAGGGAPEIEMSMQLAAWAKELRGMESYCVREFAEALEVIPYTLAENAGLDPISTVTELR 483
Query: 373 KAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMAK 194
H +G+KNAG ++ + + E+ ++ L+ + A ILK+D I+ +
Sbjct: 484 NRHAKGEKNAGINV--RKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDIVTVR 541
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 82.2 bits (194), Expect = 3e-16
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Frame = -2
Query: 574 IARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANAT 395
I ++ + +PG GATE+ ++ L + + ++ G+E++ A+A E+IPR LA N G N
Sbjct: 403 ILKNPKLLPGGGATELTVSAALKQKSSSVEGVEKWPYEAAALAFEAIPRTLAQNCGLNVI 462
Query: 394 EVVNKIY---KAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTI 224
++ ++ H G+ NA ID + + D KE+ I DSY +K K A+ AA +
Sbjct: 463 RIMTQLQGKDMLHANGE-NAWVGIDGRSGDIVDMKERKIWDSYSVKAQTFKTAIEAACML 521
Query: 223 LKVDQIIMA-KRAGGPKPRAP 164
L++D I+ K+ P AP
Sbjct: 522 LRIDDIVSGIKKKQAPGASAP 542
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/124 (33%), Positives = 67/124 (54%)
Frame = -2
Query: 574 IARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANAT 395
+ R+ V G G+ EI + + AD PG+EQYA+R FA AL++IP ALA+NSG +
Sbjct: 408 LIRNNSIVYGGGSAEISCSVAVEAAADRYPGVEQYAIRSFADALDAIPLALAENSGLSPI 467
Query: 394 EVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKV 215
+ + + K+ + + N ID + G KE+ + ++ + K I A ILK+
Sbjct: 468 DTLTAV-KSQQVKESNPHCGIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKI 526
Query: 214 DQII 203
D +I
Sbjct: 527 DDVI 530
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/121 (31%), Positives = 73/121 (60%)
Frame = -2
Query: 565 DGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVV 386
D R + G G E+ +A+ + + A PG + +A+ F+ AL++IP +ADN+G ++ E++
Sbjct: 396 DTRVLFGGGWPEMVMAKAVDDLARKTPGKKSHAIDAFSRALQAIPTIIADNAGLDSAELI 455
Query: 385 NKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQI 206
+++ H + AG D+ + + G D +++GI +++ +K + A AA IL+VD+I
Sbjct: 456 SQLRAEHHKENCTAGIDVITGSVG--DMQKRGISEAFKVKQAILLSATEAAEMILRVDEI 513
Query: 205 I 203
I
Sbjct: 514 I 514
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Frame = -2
Query: 565 DGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVV 386
D R + G G E+ +A+++ A PG + +A+ F+ AL+SIP +ADN+G ++ +++
Sbjct: 373 DTRVLYGGGWPEMVMAKEVDGLARKTPGKKSHAIEAFSRALQSIPTIIADNAGLDSADLI 432
Query: 385 NKIYKAHKEGQKNAGFDIDSENN---------GVCDAKEKGIIDSYLLKFWGIKYAVGAA 233
+++ H + Q AG D+ S V D ++ GI +S+ K + A AA
Sbjct: 433 SQLRAEHHKEQSTAGIDVISGGGLELILRLLPQVGDMEKLGISESFKAKQAVLMSATEAA 492
Query: 232 TTILKVDQII 203
IL+VD+I+
Sbjct: 493 EMILRVDEIV 502
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 63.7 bits (148), Expect = 1e-10
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Frame = -2
Query: 553 VPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVVNKIY 374
V G GA E L+ L A TL EQ A+ +FA +L IP+ L+ N+ +ATE+V K+
Sbjct: 394 VAGGGAVEAALSVYLENLATTLGSREQLAIAEFAESLLIIPKVLSVNAAKDATELVAKLR 453
Query: 373 KAHKEGQKNA------GFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVD 212
H Q A +D + + E G+I+ + K I++A AA TIL++D
Sbjct: 454 AYHHTAQTKADKQHFSSMGLDLSKGIIRNNLEYGVIEPAMSKVKIIQFATEAAITILRID 513
Query: 211 QII-MAKRAGG 182
+I + K G
Sbjct: 514 DMIKLTKEESG 524
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 57.2 bits (132), Expect = 9e-09
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = -2
Query: 565 DGRFVPGAGATEIELAQQLLE-FADTLPGLEQYAVRKFAVALESIPRALADNSGANATEV 389
D V GAGA E+ + L++ T+ G Q V FA AL IP+ LA+NSG + +V
Sbjct: 423 DEAVVLGAGAFEVAAKKHLIDNVKKTVKGRAQLGVEAFADALLVIPKTLAENSGLDTQDV 482
Query: 388 VNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQ 209
+ + H G ++ + D + +GI D+Y +K I A+ +L VD+
Sbjct: 483 IVSLQNEHDRG---LVVGLNHHSGEPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVDE 539
Query: 208 IIMAKR 191
+I A R
Sbjct: 540 VIRAGR 545
>11_06_0178 +
20942757-20942801,20943790-20943867,20943930-20944025,
20944114-20944221,20944322-20944420
Length = 141
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -2
Query: 574 IARDGRFVPGAGATEIELAQQLLEFA 497
+ RD R +PGA ATEIELA++L EF+
Sbjct: 111 MCRDSRIIPGAAATEIELAKRLKEFS 136
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 36.3 bits (80), Expect = 0.018
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Frame = -2
Query: 553 VPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIP-RALADNSGANATEVVNKI 377
V G G T + LA ++ D L EQ + S P + +A N+G N + V K+
Sbjct: 467 VVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKV 526
Query: 376 YKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMA 197
N F ++ D GIID + +++A A T L D +++
Sbjct: 527 LS-----NDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVE 581
Query: 196 KRAGGPKP 173
+ P P
Sbjct: 582 IKEPEPAP 589
>04_04_1141 +
31180906-31181249,31181719-31181862,31181971-31182054,
31182196-31182236,31182726-31182803,31183050-31183139,
31183236-31183325,31183808-31183962,31184737-31184796
Length = 361
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 331 DSENNGVCDAKEKGIIDSYLLK 266
DSEN+G A +KG++DS +L+
Sbjct: 248 DSENSGTASATKKGVLDSIVLQ 269
>01_05_0793 +
25278846-25279504,25279598-25279702,25280949-25281071,
25281167-25281337,25281440-25281569,25281797-25282039,
25282084-25282202,25282269-25282331,25282423-25282486
Length = 558
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 409 GANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFW 260
G+N+TE NK+ + + G+D+ G +E +I Y+L W
Sbjct: 497 GSNSTEFANKVERTGSSTSDSLGYDVIDHQCGYRSDRE--MIGRYMLVLW 544
>09_04_0669 +
19335661-19335917,19336153-19336279,19336393-19336771,
19336857-19336915,19337413-19337449,19337629-19337996,
19338493-19338543
Length = 425
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 155 TSSWRSWFWPACSLCHNDLINLKNGCCCSNSILY 256
+S+ RS W C C DL++L + CSN+I +
Sbjct: 61 SSAARSRLW--CPFCSADLVDLDSRFACSNAIYH 92
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 188 CSLCHNDLINLKNGCCCSNS 247
CS+ HN+L+N++ C NS
Sbjct: 401 CSIWHNELLNIRKDQCSENS 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,654
Number of Sequences: 37544
Number of extensions: 269668
Number of successful extensions: 713
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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