Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d14
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   3.3  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.8  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   7.7  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 62  GTRPCNIKANNFNQIIVPM 6
           GT  C+I AN FNQ + PM
Sbjct: 126 GTALCSISANAFNQSMEPM 144


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 88  EQKLNCKYKKIEFN*LYIYFEFN*LYISF 174
           ++KL    ++I FN +Y+Y  F+  Y  F
Sbjct: 100 QEKLKAPRRRISFNRVYVYINFSMGYRGF 128


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 403 IRNKIMPIIMMIGAVLFLGLILYFIYRYMTKXXXXXXXXXGAPTPIVIMQHPASTTAP 230
           I N ++ + +++GA++ L     F+Y+ M            AP  ++++  PA+   P
Sbjct: 354 IENGLVYLGILVGALITLACYFVFLYKVMI-PAFMASGGDFAPEGVLVISFPATFFIP 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,945
Number of Sequences: 5004
Number of extensions: 29893
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)