Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d14
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 29 1.9
08_02_0607 + 19285580-19286138,19286734-19287668 29 2.6
04_03_0381 - 15163425-15164903 29 2.6
04_03_0380 - 15150814-15152304 29 2.6
04_03_0369 + 15012906-15014417 29 2.6
04_03_0348 + 14735581-14737071 29 2.6
04_03_0347 + 14723118-14724548 29 2.6
04_03_0323 - 14364145-14365656 29 2.6
02_04_0351 + 22249117-22249624,22249710-22250674 29 3.4
04_03_0354 + 14830325-14830826,14831491-14832416 28 4.5
04_03_0353 - 14785648-14787213 28 4.5
02_05_1026 - 33598275-33599561 27 7.8
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 58 VPLSDAITFAEQKLNCKYKKIEF 126
VP+ + FAEQ+ NC+YK+ E+
Sbjct: 32 VPMLSWLFFAEQQTNCRYKQTEW 54
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L I+ G VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 WNSTLESIVGG-VPMVCWPFFAEQQTNCRYKRTEW 431
>04_03_0381 - 15163425-15164903
Length = 492
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 381 WNSTLESLAAG-VPMLSWPFFAEQQTNCRYKRTEW 414
>04_03_0380 - 15150814-15152304
Length = 496
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 387 WNSTLESLAAG-VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0369 + 15012906-15014417
Length = 503
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 391 WNSTLESLAAG-VPMLSWPFFAEQQTNCRYKRTEW 424
>04_03_0348 + 14735581-14737071
Length = 496
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 387 WNSTLESLAAG-VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0347 + 14723118-14724548
Length = 476
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 365 WNSTLESLCAG-VPMLSWPFFAEQQTNCRYKRTEW 398
>04_03_0323 - 14364145-14365656
Length = 503
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L + G VP+ FAEQ+ NC+YK+ E+
Sbjct: 391 WNSTLESLAAG-VPMLSWPFFAEQQTNCRYKRTEW 424
>02_04_0351 + 22249117-22249624,22249710-22250674
Length = 490
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 46 LQGLVPLSDAITFAEQKLNCKYKKIEF 126
L G VP+ FAEQ+ NC+YK +E+
Sbjct: 393 LSGGVPMLCWPFFAEQQTNCRYKCVEW 419
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L I+ G VP+ FAEQ+ NC+YK+ E+
Sbjct: 376 WNSTLESIV-GDVPMVCWPFFAEQQTNCRYKRTEW 409
>04_03_0353 - 14785648-14787213
Length = 521
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 22 WLKLLALILQGLVPLSDAITFAEQKLNCKYKKIEF 126
W L I G VP+ FAEQ+ NC+YK+ E+
Sbjct: 422 WNSTLESIAGG-VPMVCWPFFAEQQTNCRYKRTEW 455
>02_05_1026 - 33598275-33599561
Length = 428
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = -1
Query: 424 SSNSSDGIRNKIMPIIMMIGAVL----FLGLILYFIYRYMTK 311
S++ DG+ NKI P I+ I AVL F+ +L+ + R++ +
Sbjct: 20 SASGIDGVENKISPSIVFIVAVLAIVFFVCGLLHLLVRHLLR 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,587,975
Number of Sequences: 37544
Number of extensions: 176787
Number of successful extensions: 328
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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