Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d14
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical pr...    34   0.061
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   9.3  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical
           protein ZC449.4 protein.
          Length = 76

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 11/37 (29%), Positives = 28/37 (75%)
 Frame = -1

Query: 427 KSSNSSDGIRNKIMPIIMMIGAVLFLGLILYFIYRYM 317
           K+ N +  +RN+++ +++++  +L LG+++YF++R M
Sbjct: 18  KNGNEASSLRNELLALMVLL-CLLILGVVIYFVFRSM 53


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +1

Query: 400 GCRHYCWTICRLNLLFPVT-NL----NPSRQLNH 486
           G  HYCW  C   + F VT NL    + S+ LNH
Sbjct: 182 GTIHYCWIACSYMIAFAVTLNLFLRSHGSKFLNH 215


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 409 HYCWTICRLNLLFPVTNL 462
           H CW  C LN+L+  T+L
Sbjct: 189 HLCWLNCILNILYKATSL 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,729
Number of Sequences: 27780
Number of extensions: 165442
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)