Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0244 + 1786009-1788048 30 1.8
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 2.4
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 29 3.1
06_01_0236 + 1804368-1804374,1804514-1804532,1804652-1805011,180... 28 7.2
02_03_0081 - 14970024-14970098,14970194-14970310,14970456-149708... 28 7.2
02_02_0583 + 11813372-11813738,11823130-11823209,11823357-118235... 28 7.2
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 27 9.6
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668... 27 9.6
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 27 9.6
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 27 9.6
>07_01_0244 + 1786009-1788048
Length = 679
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 72 LVVYTHLGI*LKDA*LHPHTWSRNCKNVSEP 164
L+VY H+ D LH HT+S NC+ + P
Sbjct: 432 LLVYEHMPNGSLDKYLHEHTYSSNCRTLGWP 462
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 636 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
K+ D NV +PL+ A L+ +D + DKL + P F N
Sbjct: 658 KRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKN 707
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 160 SLDQTSVFTFGTRNHVCNVTV*YKPLPVHTAARYIVFFQIAQYFLYARRHIDLAVQHVDD 339
S+ +V T RN +C V + +A+ + + + Y RH + HV D
Sbjct: 739 SISIPTVTTLALRNTICGKPVLKDVASLVSASVVLYCVESGNFDAYDLRHYLWSFSHVKD 798
Query: 340 IIFSF 354
+IFS+
Sbjct: 799 LIFSY 803
>06_01_0236 +
1804368-1804374,1804514-1804532,1804652-1805011,
1805214-1805248,1805306-1805385,1805488-1805701,
1805972-1806111,1806197-1806235,1806328-1806369
Length = 311
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 183 ENRCLIKALTHFYNYDSKCVGEVMHLL 103
+NRCL++AL YN D +G+ + L
Sbjct: 147 DNRCLVQALVEKYNDDHNLLGDFAYEL 173
>02_03_0081 -
14970024-14970098,14970194-14970310,14970456-14970836,
14971345-14971424,14971925-14972075
Length = 267
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 327 LNSKINMPPCIQKILGDLKKNNVPRGGMYRKRF--ILNCYIANVVSCTKCENRCLIKALT 154
+ SK++ + I L K + + R I +CY VV + E+RCL+K L
Sbjct: 62 IRSKVHKQTWLNSIYKSLPKRYILKRWTREARVGAIEDCYGKIVVEDPRLEDRCLLKFLI 121
Query: 153 H 151
H
Sbjct: 122 H 122
>02_02_0583 +
11813372-11813738,11823130-11823209,11823357-11823507,
11832674-11832778,11832831-11833282
Length = 384
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 636 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
K+ D N +PL+ A + D + DKL + P T F N
Sbjct: 252 KRLEGARDEVANAATPLVQAMFFNNNGPSTFDASEIFDKLRVAPDTYFKN 301
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 186 CENRCLIKALTHFYNYDSKCVGEVMHLL 103
CE+R L+ + F NYD+ V HLL
Sbjct: 1047 CESRKLVTLSSKFSNYDTNTESGVSHLL 1074
>09_03_0025 -
11665969-11666417,11666490-11666594,11666667-11666856,
11666933-11667120,11667240-11667571,11667654-11667940,
11668027-11668911
Length = 811
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 636 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
K+ D N +P+I A L+ +D + DKL++ P F N
Sbjct: 680 KRLEGARDDVANAAAPIIQAMFLNNGGPSALDATEIFDKLSVAPEVYFKN 729
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 249 GMYRKRFILNCYIANVVSCTKCENRCLIKA 160
G RKR NCY +V C C +R ++KA
Sbjct: 637 GFTRKRH--NCYNCGLVHCHACSSRKVLKA 664
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 90 DVYKPPNCQKMKTVDKLCPFAGNC 19
D PP C +T+D L F G C
Sbjct: 152 DTQAPPTCCSARTIDDLADFEGLC 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,539
Number of Sequences: 37544
Number of extensions: 374648
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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