Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d12
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    26   0.34 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    26   0.34 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.7  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 560 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDK--NHI--VAKLCDATRAK 414
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 20  DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 560 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDK--NHI--VAKLCDATRAK 414
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 3   DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 55


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 170 KANKYYAFH 144
           K+N YYAFH
Sbjct: 280 KSNDYYAFH 288


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 365 NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 243
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 288 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 330


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 365 NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 243
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 303 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,621
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)