Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d11
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 178 5e-46
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 27 2.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.1
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.1
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 9.4
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.4
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.4
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 178 bits (434), Expect = 5e-46
Identities = 96/212 (45%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
Frame = -1
Query: 647 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTW 471
L LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QIA+Y A
Sbjct: 12 LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66
Query: 470 SQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRLKAYADKKSKK 291
T P ++DLFGS + Y KK+ K
Sbjct: 67 ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122
Query: 290 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 111
P + KS + LDVKPWDDET M E+E VR+I+M+GL+WG SKLVPVG+G+NK QI V+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVV 182
Query: 110 EDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 15
EDDKVS++ L E+++ FED+VQS DIAA +K+
Sbjct: 183 EDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 459 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 569
G L S F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 647 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 489
L+ + YL++ Y T Q + Q+F PA L W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 162 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 269
FG S HF+ Y VF IG I P W++ N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 140 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 18
INK Q+M E ++ ++DLL++ EF + + D+ K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 448 PPVLNPRLPPQQRKTTMTT 392
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 647 LNDLNQYLAEKSYVSGYTPSQADVQVF 567
L+ +++YL ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 308 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 213
DK+S P LIA++ + ++ D+ +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 509 DYTIVVRGEG*RPAPCQLAQILEHQLE 589
+Y +VV G G P C + L QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,779
Number of Sequences: 5004
Number of extensions: 48936
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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