Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d08
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    28   0.93 
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    28   1.2  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   1.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   6.5  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   8.6  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   8.6  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 126 VPTSISGSKK--RKNSVPAKPTIFYKKSPQSAGCGSNTFNG 10
           +P ++S  ++  R+ S+P  P+ F   SP S    ++ +NG
Sbjct: 262 IPANVSMQQQMGRRGSIPVNPSTFSASSPPSGSMLASPYNG 302


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = -1

Query: 603 KKKVIXQQ---LNTFLFNSWYTKIKQPEWXSSPAMW-----DLVKNTPELADFVFIFDHT 448
           K+K++ Q+   LN    +SW +KI  P+W  + A++     +     P LA  + + +H+
Sbjct: 140 KRKILQQEWLSLNQRYSDSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHS 199

Query: 447 EKMGKK 430
            K   K
Sbjct: 200 SKSNAK 205


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 147 APSTTEYVPTSISGSKKRKNSVPAK--PTIFYKKSPQSA 37
           AP  +  VPT  +G     +SVP +  P+    K+P SA
Sbjct: 490 APQPSSNVPTKFTGGASESSSVPPRPIPSAMKGKAPASA 528


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +2

Query: 128 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 307
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 308 ISQLSFNSAKFALVSTAV 361
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 345 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 172
           NA +  +K+S      +   F    ++   FNNN+  L   +     + D + ++++K  
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582

Query: 171 TVALKLPVAPSTTEYVPTSISGSK 100
                L  +P+   YV   +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 460 NEHKICQFGRVFHQIPHGRATXPLGLLDLSV 552
           N +K+C FG   H IP  +       L+  +
Sbjct: 178 NSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 171 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKPTIFYKKSPQSAGCGSNTFNG 10
           T AL+  +A      V +S     +    + A  TI YKK+PQ A       NG
Sbjct: 179 TFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTINYKKTPQWASPALKMTNG 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,097
Number of Sequences: 5004
Number of extensions: 49223
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)