Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d08
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    31   0.72 
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   6.7  
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013     27   8.9  

>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 303  DKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLP 151
            DKL   + S+L +    N+   L+++YD+     F+T    K K  A +LP
Sbjct: 1141 DKLRQWYLSMLQKAIKENIVVELTNLYDQF----FVTAKECKIKVSAARLP 1187


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 436 THLFSVIKNEHKICQFGRVFHQIP 507
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
          Length = 829

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  TEFFLFLLPLIEVGTYSVVDGATGNLSATVLNLAI 187
           T  F+FLL ++ VG YS V G      A +L LAI
Sbjct: 258 TYVFVFLLVVLLVGFYSDVIGTNSFHGALMLGLAI 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,296
Number of Sequences: 37544
Number of extensions: 310476
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)