Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15d08
(612 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA... 32 0.70
AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-P... 30 2.8
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P... 29 3.7
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 29 4.9
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 29 4.9
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 29 4.9
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 29 4.9
AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein ... 29 6.5
AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein ... 29 6.5
>AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA
protein.
Length = 922
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 381 PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 208
P S+KR+ +T N + E K LYS + +++ET N +PL Y L
Sbjct: 827 PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886
Query: 207 RDFITKNMAK 178
+ + ++ K
Sbjct: 887 KAYKALDVTK 896
>AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-PA
protein.
Length = 9196
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = -1
Query: 249 VAPLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKK-------RK 91
V+P ++I + +R I + +K S+T +S S + + +
Sbjct: 8526 VSPAKTTIVKQTPSRKTINTDKSKLSNKTESRRSVTSSTSTTTSSASATSRVISEIHFER 8585
Query: 90 NSVPAKPTIFYKKSPQSAGCGSNT 19
+S PA +IFY+ PQ G S T
Sbjct: 8586 SSSPASSSIFYESQPQGEGSRSTT 8609
>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
protein.
Length = 1161
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 168 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKPT 67
+A K PVA STT VPT+++ SK S + T
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTT 373
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 144 PSTTEYVPTSISGSKKRKNSVPAKPTIFYKKSPQSAGCGSNTFN 13
P +T Y P+S S S PT+ ++ SP AG GSN ++
Sbjct: 1628 PQSTGYSPSSSGYSP---TSPVYSPTVQFQSSPSFAGSGSNIYS 1668
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 144 PSTTEYVPTSISGSKKRKNSVPAKPTIFYKKSPQSAGCGSNTFN 13
P +T Y P+S S S PT+ ++ SP AG GSN ++
Sbjct: 147 PQSTGYSPSSSGYSP---TSPVYSPTVQFQSSPSFAGSGSNIYS 187
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 144 PSTTEYVPTSISGSKKRKNSVPAKPTIFYKKSPQSAGCGSNTFN 13
P +T Y P+S S S PT+ ++ SP AG GSN ++
Sbjct: 1168 PQSTGYSPSSSGYSP---TSPVYSPTVQFQSSPSFAGSGSNIYS 1208
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 144 PSTTEYVPTSISGSKKRKNSVPAKPTIFYKKSPQSAGCGSNTFN 13
P +T Y P+S S S PT+ ++ SP AG GSN ++
Sbjct: 1626 PQSTGYSPSSSGYSP---TSPVYSPTVQFQSSPSFAGSGSNIYS 1666
>AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein
protein.
Length = 377
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 300 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 130
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
>AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein
protein.
Length = 373
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 300 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 130
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,108,318
Number of Sequences: 53049
Number of extensions: 525259
Number of successful extensions: 1701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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