Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d08
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    32   0.37 
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   0.86 
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   0.86 
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.86 
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   4.6  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   4.6  
U39678-7|AAK39210.1|  193|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 303 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 133
           D+  +E Y+ LN    F +NV  L+S I + +    D I +++ K     ++LP   +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319

Query: 132 EYVPTSISGSKK 97
           E  P ++ G  +
Sbjct: 320 EQPPRTVLGCSR 331


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 345 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 217
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 345 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 217
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 345 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 217
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 267 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 425
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 415  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 257
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>U39678-7|AAK39210.1|  193|Caenorhabditis elegans Hypothetical
           protein C39D10.5 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 153 PVAPSTTEYVPTS-ISGSKKRKNSVPAKPTIFYKKS 49
           P   S+T+  P++ ++GS+KRK+S P K    +KKS
Sbjct: 72  PEVVSSTQPDPSAQLTGSRKRKSSSPKKWDELHKKS 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,600
Number of Sequences: 27780
Number of extensions: 283889
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)