Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d08
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 320 SFNSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAI 430
           S+NS  FA++ T           + +LE DD  R+ I
Sbjct: 206 SYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAII 242


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 114 ISGSKKRKNSVPAKPTI 64
           + GS+KRK +VP +P +
Sbjct: 194 LEGSQKRKFNVPLQPVV 210


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 114 ISGSKKRKNSVPAKPTI 64
           + GS+KRK +VP +P +
Sbjct: 194 LEGSQKRKFNVPLQPVV 210


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  KIVGLAGTEFFLFLLPLIEVGTYSVVDGATGN 157
           +I  +A T FFLFLL      T +++ G  GN
Sbjct: 279 RIAKVAFTIFFLFLLAWTPYATVALI-GVYGN 309


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  KIVGLAGTEFFLFLLPLIEVGTYSVVDGATGN 157
           +I  +A T FFLFLL      T +++ G  GN
Sbjct: 279 RIAKVAFTIFFLFLLAWTPYATVALI-GVYGN 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,917
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)