Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d04
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   0.40 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.6  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 202 VTIYVTVENGENGNMNVLGLLKYDEDENDYTFL*FYSTFG*TLAAVVRANVSYLLSML 29
           V I + ++  +  N  +   LK  + E + T   F+S     L ++  A+ SYL  M+
Sbjct: 378 VKIRIDIDKEDERNEIISSALKLSQSELEITACKFFSIDNALLLSICGASSSYLFIMI 435


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 366 TWPIRMTVLPLPTRANGTSPFSTSTQIKKPKRI 268
           TW +R      P      +  STST +++P+ I
Sbjct: 19  TWFVRWLNSQQPRNVPNFAAPSTSTAVQRPQAI 51


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 312 SPFSTSTQIKKPKRIRYKNYVQILIKSQ 229
           +PF+T   +   K+ R K Y+ I  +++
Sbjct: 120 TPFTTQQLLALEKKFRDKQYLSIAERAE 147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,751
Number of Sequences: 336
Number of extensions: 2412
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)