Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d04
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   1.7  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   7.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.0  
SPCC24B10.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.3  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   9.3  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 319 WNKSVFYVNTNKKTEA--DSLQKLCADFNQISMLLED-NLIKVTIYVTVEN 176
           W KS+F+    K TE   DS   + ++    S L+ED NL  +   V +E+
Sbjct: 513 WGKSIFFEKLKKPTETFMDSKTDIPSEAPDNSKLVEDTNLHTINATVNIES 563


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 318 GTSPFSTSTQIKKPKRIRYKNYVQILIKSQCCWKI 214
           G  PF +   +  P+ +R K YVQ L++    W +
Sbjct: 318 GRLPFDSYPTLD-PENVRIKRYVQRLVRCDYTWHL 351


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 580 WNVVN-STRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSD 404
           WN+ + S   ++ + ++ E   +  N  N   N S + +  A  +   LKS L+EN  S+
Sbjct: 215 WNMFSRSVSQQIQDVQDPETRKDYMNAIN---NFSSNVQEGAKQSFTQLKSFLDENVYSE 271

Query: 403 N 401
           N
Sbjct: 272 N 272


>SPCC24B10.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 499 NARINISRSNKRVASYNVNMLKSELEENDMSDN-KFIVQF 383
           +AR+N +  +  +++YN+ ++  +LE   +S N K +V F
Sbjct: 42  DARMNRNIEDLEISNYNLRLMNEQLESQLLSLNVKPVVSF 81


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 538 KENEAYSNLQNCTNARIN--ISRSN--KRVASYNVNMLKSELEENDMSDNK 398
           KENE Y + Q+C ++R+   +S  N  KR+   +    +  +E N    NK
Sbjct: 94  KENELYESSQDCGHSRLAQILSEENQIKRLPQSDNTTTERIIENNPNYSNK 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,548
Number of Sequences: 5004
Number of extensions: 42002
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)