Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d04
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    29   2.8  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    29   2.8  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   6.5  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   6.5  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   6.5  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   6.5  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 639 YHXQYKMSTXFXMEQTCT*IGTWSTLRASNCARLKKTKPIQICKIAQTQE 490
           +H  YK+ T    ++  T  GTW   +     +    KP+ I K+A  +E
Sbjct: 37  FHDAYKIWTC--CDKKSTDFGTWMNYKGCTRGKHSNEKPVDIVKVAAVKE 84


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 639 YHXQYKMSTXFXMEQTCT*IGTWSTLRASNCARLKKTKPIQICKIAQTQE 490
           +H  YK+ T    ++  T  GTW   +     +    KP+ I K+A  +E
Sbjct: 37  FHDAYKIWTC--CDKKSTDFGTWMNYKGCTRGKHSNEKPVDIVKVAAVKE 84


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -2

Query: 562 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 383
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 382 KSD 374
           +++
Sbjct: 321 ETN 323


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -2

Query: 562 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 383
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 382 KSD 374
           +++
Sbjct: 338 ETN 340


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -2

Query: 562 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 383
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 382 KSD 374
           +++
Sbjct: 338 ETN 340


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -2

Query: 562 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 383
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 382 KSD 374
           +++
Sbjct: 321 ETN 323


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 571 VNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFI 392
           VN+ R +L +  ++     L++    R     S KR        ++S+++EN+ S  K  
Sbjct: 32  VNALR-KLQDDSQSAHQKALKDAEENRRQYEESAKRSEQAANERIRSQIDENNKSIEKLR 90

Query: 391 VQFKSDD 371
            QFK  D
Sbjct: 91  AQFKEQD 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,469
Number of Sequences: 27780
Number of extensions: 239255
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)